BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934499
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37970.1 | Symbols: SOUL-1 | SOUL heme-binding family protei... 1136 0.0
> AT2G37970.1 | Symbols: SOUL-1 | SOUL heme-binding family protein
| chr2:15890972-15891843 FORWARD LENGTH=872
Length=872
Score = 1136 bits (615), Expect = 0.0
Identities = 688/723 (95%), Gaps = 5/723 (1%)
Strand=Plus/Plus
Query 1 TGATAAATACTACTTCTCCTATGGGAATAGTTTTTGGTAAAACTTACATAATGGGAATGG 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 36 TGATAAATACTACTTCTCCTATGAGAATAGTTTTTGGTAAAACTTACATAATGGGAATGG 95
Query 61 TTTTTGGTAAAATCGTTGTGGAGACTCCTAAATACACGGTGACTAAATCCGGTGATGGTT 120
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 96 TTTTTGGTAAAATCGCTGTAGAGACTCCTAAATACACGGTGACTAAATCCGGTGACGGTT 155
Query 121 ATGAGATCCGTGAATATCCACCGGCGGTTGCGGCGGAGGTTACATACGATGCGTCGGAGT 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 156 ATGAGATCCGTGAATATCCACCAGCGGTTGCGGCGGAGGTTACATACGATGCGTCGGAGT 215
Query 181 TCAAAGGTGATAAAGATGGAGGCTTTCAGGTTTTGGCTAAGTACATAGGTGTGTTTGGCA 240
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 216 TCAAAGGTGATAAAGACGGAGGCTTTCAGCTTTTGGCTAAGTACATAGGTGTGTTTGGCA 275
Query 241 AACCGGAGAATGAGAAGCCGGAGAAAATTGCGATGACTGCTCCGGTGATCACTAAAGAAG 300
|||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 276 AACCGGAGAATGAGAAACCGGAGAAAATTGCTATGACTGCACCGGTGATCACTAAGGAAG 335
Query 301 GTGAGAAGATTGCGATGACTGCTCCGGTGATTACTAAGGAGAGTGAGAAGATTGAGATGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 GTGAGAAGATTGCGATGACTGCTCCGGTGATTACTAAGGAGAGTGAGAAGATTGAGATGA 395
Query 361 CTTCTCCGGTTGTGACTAAGGAAGGTGGTG-A-A-GGAGGGAAGAAGATGGTGACGATGC 417
||||||||||||| |||||||||||||||| | | ||| |||||||| ||||||||||||
Sbjct 396 CTTCTCCGGTTGTAACTAAGGAAGGTGGTGGAGAAGGAAGGAAGAAGTTGGTGACGATGC 455
Query 418 AGTTTTTGTTGCCGTCTATGTATAAGAAGGCAGAGGAGGCGCCGCGTCCGACGGATGAGA 477
|||||||||||||||| |||||||||||||| |||||||| || ||||| ||||||||||
Sbjct 456 AGTTTTTGTTGCCGTCGATGTATAAGAAGGCGGAGGAGGCACCACGTCCAACGGATGAGA 515
Query 478 GGGTTGTGATTAGGGAGGAAGGAGGGAGAAAGTATGGTGTGGTTAAGTTTAGTGGTACGG 537
|||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| |
Sbjct 516 GGGTTGTGATTAAGGAGGAAGGAGGGAGGAAGTATGGTGTGATTAAGTTTAGTGGTATAG 575
Query 538 CGTCGGATAGTGTGGTGAGTGAGAAGGTGAAGAAGCTGACTAGTGATCTTGAGAAAGATG 597
||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 576 CGTCGGAGAGTGTGGTGAGTGAGAAGGTGAAGAAGCTGAGTAGTCATCTTGAGAAAGATG 635
Query 598 GGTTTAAGATCACCGGAGATTTCATTCTTGCTAGGTATAATCCTCCATGGACGTTACCAC 657
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 636 GGTTTAAGATCACCGGAGATTTCGTTCTTGCTAGGTATAATCCTCCATGGACGTTACCAC 695
Query 658 CGTTTAGGACCAATGAGGTCATGATTCCTGTTGAATGAAT--GATCCAAAGTTTCCAGCT 715
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 696 CGTTTAGGACCAATGAGGTCATGATTCCTGTTGAATGAATTTGATTCAAAGTTTCCTGCT 755
Query 716 TTT 718
|||
Sbjct 756 TTT 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5