BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934718
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39530.1 | Symbols: | Uncharacterised protein family (UPF04... 797 0.0
AT2G39518.1 | Symbols: | Uncharacterised protein family (UPF04... 368 3e-101
> AT2G39530.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr2:16498486-16499471 REVERSE LENGTH=780
Length=780
Score = 797 bits (431), Expect = 0.0
Identities = 531/580 (92%), Gaps = 4/580 (1%)
Strand=Plus/Plus
Query 1 TAATTAACGGGAAGATCTATATGGCTCCACCACCTCCGTCACCGCCGTCCGTTACGTTGA 60
|||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 51 TAATTAACGGGAAGATTTATATGGCTCCACCACCTCCGGCACCACCGTCCGTTACGTTGA 110
Query 61 GGACAGTACTCCTCCTCCTTAGGGTTTTGACGGCTGCTTTCCTCGTCATAACGGTGGTCC 120
||||||| ||||| ||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct 111 GGACAGTGCTCCTTCTCCTTAGGGTTTTGACCGCGGCTTTCCTCCTCATAACGGTGGTCC 170
Query 121 TCATCAGCACCAACACCGTCACTCTCGAAGTCTCAAGCACATCTATAAAAATGCATTTTA 180
||||||||||||||||||||||||||||| | |||||||| ||||| ||| ||| ||| |
Sbjct 171 TCATCAGCACCAACACCGTCACTCTCGAAATTTCAAGCACGTCTATCAAATTGCCTTTCA 230
Query 181 ACGATGTCTATGCTTATAGGTACATGATGTCCGCTGCCGCCATCGGACTCCTTTACGCCG 240
||||||||||||||||||| |||||| |||||||||||| ||||||||| |||||||||
Sbjct 231 ACGATGTCTATGCTTATAGATACATGCTGTCCGCTGCCGTCATCGGACTAGTTTACGCCG 290
Query 241 TTGTACAACTGTTCTTAACAATCTCCCAATTCGCCAC-GGAAATTACACATCCTCTTAGT 299
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |
Sbjct 291 TTGTACAACTGTTCTTAACAATCTCCCAATTTGCCACCGGAAAA-ACACATCCTCTTACT 349
Query 300 TATCAGTTCAATTTCTACGGTGATAAGATAATATCATATATACTTGCGACGGGTTCGGCG 359
||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct 350 TATCAGTTCGATTTCTACGGTGATAAGGTAATATCATATTTACTTGCAACGGGTTCGGCG 409
Query 360 GCTGGATTTGGAGTGAGCAAAGATTTGAAAGACACATACCTAGCATTGATAGAACTTGAT 419
|| |||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||
Sbjct 410 GCAGGATTTGGAGTGAGCAAAGATTTGAAAGACACATACATAGCATTAATAGAATTTGAT 469
Query 420 TCAACAGATCCGGTGGATAGGTTCTTCAGTAAAGGATACGCATCGGCCAGTCTTCTTCTC 479
|| || ||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct 470 TCGACTGATCCAGTGGATAAGTTCTTTAGTAAAGGATATGCATCGGCCAGTCTTCTTCTC 529
Query 480 TTTGCTTTCATCTCTCTTGCGGTTTTATCCGTTTTCTCATCCCTTGCTCTTTCCAAACGA 539
|| || ||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 530 TTCGCATTCGTCTCTCTTGCCGTTTTATCCGTTTTCTCATCCCTTGCTCTTTCCAAACGA 589
Query 540 CCAATTCAAGTCTCATAAATACACATATATGATCACTGTA 579
||| ||| ||||||||||| |||||||| ||||| ||||
Sbjct 590 CCAGTTCCAGTCTCATAAACACACATAT--GATCATTGTA 627
> AT2G39518.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr2:16495875-16496995 REVERSE LENGTH=737
Length=737
Score = 368 bits (199), Expect = 3e-101
Identities = 424/531 (80%), Gaps = 22/531 (4%)
Strand=Plus/Plus
Query 20 TATGGCTCCACCACCTCCGTCACCGCC-GTCCGTTACGTTG-AGGACAGTACTCCTCCTC 77
|||||| ||||||||||| || || || | | ||| ||||| ||| ||||||| |
Sbjct 58 TATGGCACCACCACCTCCTTCGCCACCAG-CTGTTTCGTTGAAGG-TTTTACTCCTTTTA 115
Query 78 CTTAGGGTTTTGAC-GGCTGCTTTCCTCGTCATAACGGTGGTCCTCATCAGCACCAACAC 136
||||||||||| || || | |||||| || ||| || | || || ||||||||||||
Sbjct 116 CTTAGGGTTTTAACAGG-AGTTTTCCTTGTTATAGCGCTAATCATCCTCAGCACCAACAG 174
Query 137 CGTCACTC-TCGAAGTCTCAAGCACATC-TA-TAAAAATGCATTTTAACGATGTCTATGC 193
||||| | | | | ||||||| | | | | | ||| | ||||| || ||||| |||||
Sbjct 175 TGTCAC-CATTGTA-TCTCAAGGA-AGCGCATTGAAATTTCATTTCAAAGATGTTTATGC 231
Query 194 TTATAGGTACATGATGTCCGCTGCCGCCATCGGACTCCTTTACGCCGTTGTACAACTGTT 253
|||||| || ||| | || ||||||| ||| ||||| |||||||||| ||||||||||
Sbjct 232 TTATAGATATATGCTTTCAGCTGCCGTCATTGGACTGGTTTACGCCGTCATACAACTGTT 291
Query 254 CTTAACAATCTCCCAATTCGCCA-CGGAAATTACACATCCTCTTAGTTATC-AGTTCAAT 311
||| ||||||||| ||||||||| ||| | | | | | ||| ||| ||||| | || ||
Sbjct 292 CTTCACAATCTCCGAATTCGCCACCGG-AGTGAAAAACCCTTTTAATTATCAACTT-GAT 349
Query 312 TTCTACGGTGATAAGATAATATCATATATACTTGCGACGGGTTCGGCGGCTGGATTTGGA 371
|| |||||||| ||| |||||||||| || | ||||||||||| || ||||||||||||
Sbjct 350 TTTTACGGTGACAAGTTAATATCATACCTAGTGGCGACGGGTTCTGCAGCTGGATTTGGA 409
Query 372 GTGAGCAAAGATTTGAAAGACACATACCTAGCATTGA-TAGAACTT-GATTCAACAGATC 429
|||| |||||||||||||||||||| |||||||| | | | | || ||||| || ||||
Sbjct 410 GTGACCAAAGATTTGAAAGACACATTTCTAGCATT-AGTCGCA-TTAGATTCGACTGATC 467
Query 430 CGGTGGATAGGTTCTTCAGTAAAGGATACGCATCGGCCAGTCTTCTTCTCTTTGCTTTCA 489
| ||||||| |||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 468 CAGTGGATAAGTTCTTTAGCAAAGGCTACGCATCGGCCAGTCTTCTTCTCTTTGCTTTCA 527
Query 490 TCTCTCTTGCGGTTTTATCCGTTTTCTCATCCCTTGCTCTTT-CCAAACGA 539
||| |||||| |||||||| |||||||||||| |||| | | ||||||||
Sbjct 528 TCTGTCTTGCTGTTTTATCTGTTTTCTCATCCTTTGC-CATGGCCAAACGA 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5