BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934736
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39720.1 | Symbols: RHC2A | RING-H2 finger C2A | chr2:165672... 1805 0.0
> AT2G39720.1 | Symbols: RHC2A | RING-H2 finger C2A | chr2:16567209-16568822
REVERSE LENGTH=1614
Length=1614
Score = 1805 bits (977), Expect = 0.0
Identities = 1166/1252 (93%), Gaps = 34/1252 (3%)
Strand=Plus/Plus
Query 1 TCTTTCAGATCCCTATTCCCATGGCTTCTGGATCTTACTGGTGTTATAGTTGTAGCCGAT 60
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 92 TCTTTCAGATCCCTATTCTCATGGCTTCTGGATCTTACTGGTGCTATAGTTGTAGCCGAT 151
Query 61 TCGTTTGGGTTTCCGATTCTCTCTCTTGCCCTGATTGCGACGGTGGTTTCCTCGAACACA 120
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 152 TCGTTTGGGTTTCCGATTCAATCTCTTGCCCTGATTGCGACGGTGGTTTCCTCGAACTCA 211
Query 121 TCCAAGAAACTCTCGATTTCACACCTTCCGATTCCTTCCACCGTCTCACCACCACCACTC 180
||||||| |||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct 212 TCCAAGAGCCTCTCGATTTCACACCTTCCGATTCCTT-CACC-AC-CACCACCACCACTC 268
Query 181 AACATCGCAGCCCCACTCGCTTCCCTCCTTCC-TCCTCTTCTTCTTCGACCCCCTCCGCT 239
|||||||||||||||||||||||||||| ||| || |||||||| || ||||| ||||||
Sbjct 269 AACATCGCAGCCCCACTCGCTTCCCTCC-TCCTTCTTCTTCTTCCTCCACCCCATCCGCT 327
Query 240 TCCATGCACGCTTCCACCGCCGAGAACAGTCCCACTCCTACCACCGTTACTCGTACCCGA 299
| | | | | || |||||| ||||||||||||||||||| |||||||||||| |||
Sbjct 328 T-C-T--A----TGCA-CGCCGATAACAGTCCCACTCCTACCATCGTTACTCGTACACGA 378
Query 300 AGCAATCGATCTCCTAATCCGGTTATTGTTCTCCGTGGATCTG--G-TGCT-C--CTTCT 353
|||||||||||||||||||| |||||||||||||||||||||| | |||| | |||||
Sbjct 379 AGCAATCGATCTCCTAATCCAGTTATTGTTCTCCGTGGATCTGCTGCTGCTCCTTCTTCT 438
Query 354 GA---TGTTTCCGAAGGTTTAGATCGATCTGCTTTTCAGATGTATTACGATGATGGTACT 410
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 GATGTTGTTTCCGAAGGTTTAGATCGATCTGCTTTTCAGATGTATTACGATGATGGTACT 498
Query 411 GATTCTGGTCTTAGACCTTTACCACCGAGTATGACTGAGTTTTTGTTAGGTTCTGGATTT 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 GATTCTGGTCTTAGACCTTTACCACCGAGTATGACTGAGTTTTTGTTAGGTTCTGGATTT 558
Query 471 GATCGCTTGTTAGATCAGATCTCTCAGATCGAGCTTAACACCAATCGGATTCATCGTTCT 530
||||| |||||||||||||| |||||||||||||||||||||||||||| || |||||||
Sbjct 559 GATCGTTTGTTAGATCAGATTTCTCAGATCGAGCTTAACACCAATCGGAATCTTCGTTCT 618
Query 531 TGTGAACATCCTCCGGCTTCTAAATCGGCCATTGAAGCTTTACCTCTGATTGAAATCGAT 590
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 619 TGTGAACATCCACCGGCTTCTAAATCGGCCATTGAAGCTTTGCCTCTGATTGAAATCGAT 678
Query 591 CCGACTCATCTCGAATCGGATTCTCAATCTCATTGCGCTGTTTGCAAAGAGAATTTCGTT 650
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 CCGACTCATCTCTTATCGGATTCTCAATCTCATTGCGCTGTTTGCAAAGAGAATTTCGTT 738
Query 651 TTGAAATCATCTGCTCGTGAGATGCCGTGTAATCACATCTATCATCCTGATTGTATCCTT 710
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 739 TTGAAATCATCTGCTCGCGAGATGCCTTGTAATCACATCTATCATCCTGATTGTATTCTT 798
Query 711 CCTTGGCTTGCGATTCGAAACTCTTGTCCGGTTTGCCGTCATGAGCTACCGACGGAGGAT 770
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 799 CCTTGGCTTGCGATTCGTAACTCTTGTCCGGTTTGCCGTCATGAGCTACCGGCGGAGGAT 858
Query 771 CTCACCGACGGAAGCGGTGGC-GCTTTGACTG-T-T-ACCGCTACTGCAGAGGAAGAGGA 826
||||||||||||| ||||| | |||||||||| | | |||||||||||||||||||||||
Sbjct 859 CTCACCGACGGAACCGGTG-CTGCTTTGACTGCTGTTACCGCTACTGCAGAGGAAGAGGA 917
Query 827 AGACTCCGCGGCAGGGTTGACGATTTGGAGGTTACCAGGTGGAGGATTCGCTGTTGGGAG 886
|||||| || || ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 918 AGACTCAGCTGCGGGGTTAACGATTTGGAGGTTACCAGGTGGAGGATTCGCTGTAGGGAG 977
Query 887 AATCCCTGGTGGTTGGAGAGGAGGAGATAGAATGATGCCGGTGGTTTACACGGAGGTTGA 946
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 978 AATCCCTGGTGGTTGGAGAGGTGGAGATAGAATGATGCCGGTGGTTTACACGGAGGTTGA 1037
Query 947 CGGTGGTAGACTCGGTGATGAGAGACTTCCgaggagagtagcttggggttcgagaagagg 1006
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1038 TGGTGGTAGACTCGGTGATGAGAGACTTCCGAGAAGAGTAGCTTGGGGTTCGAGAAGAGG 1097
Query 1007 aggaagagatgg---aggtagtagagagagaggTGGCGGGTTTGCGGGTCGGATCATGAG 1063
||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1098 TGGAAGAGATGGTGGAGGTAGTAGAGAGAGAGGTGGTGGCTTTGCGGGTCGGATCATGAG 1157
Query 1064 GCTTTTTGGATGTTTTAGTGGGTCATCTGGATCCATAGCTGCTGCTGCTGC---ATCGTC 1120
|||||| |||||||||||||| |||||||||||||| |||||||||||||| ||| ||
Sbjct 1158 GCTTTTCGGATGTTTTAGTGGATCATCTGGATCCATTGCTGCTGCTGCTGCTGCATCATC 1217
Query 1121 TGGATCCGGGTCGAGAATTCGGGTTACCCGTAGAACCAGGTCGTTCTCTATGTTTAGTAC 1180
|| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1218 CGGGTCCGGGTCCAGAATTCGGGTTACTCGTAGAACCAGGTCGTTCTCTATGTTCAGTAC 1277
Query 1181 GGCTTCGTCTTCGTCAAGGAGACGAAATTGGCTAGCGTGATTACTAGAATTA 1232
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 GGCGTCGTCTTCGTCAAGGAGACGAAATTGGCTAGCGTGATTACTAGAATTA 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61094063265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5