BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934869
Length=821
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40610.1 | Symbols: ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11... 1160 0.0
> AT2G40610.1 | Symbols: ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11,
EXPA8 | expansin A8 | chr2:16948863-16950557 REVERSE LENGTH=1105
Length=1105
Score = 1160 bits (628), Expect = 0.0
Identities = 702/738 (95%), Gaps = 4/738 (1%)
Strand=Plus/Plus
Query 85 ATTCTTCCTCCAAGGAACTCATGGAGACGACGGAGGTTGGCAAGGTGGTCACGCTACGTT 144
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 136 ATTATTCCTCCAAGGAACTCATGGAGACGACGGAGGTTGGCAAGGTGGTCACGCCACGTT 195
Query 145 CTACGGCGGTGAAGATGCTTCTGGCACCATGGGCGGAGCTTGTGGCTATGGAAATTTGTA 204
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 196 TTACGGCGGCGAAGATGCTTCCGGCACCATGGGCGGAGCTTGTGGCTATGGAAATTTGTA 255
Query 205 TGGCCAAGGTTACGGGACGAGCACGGCGGCTTTAAGTACGGCTTTATTCAACAACGGACT 264
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 256 TGGCCAAGGTTACGGGACGAACACGGCGGCTTTAAGTACGGCTCTATTCAACAACGGACT 315
Query 265 CACGTGTGGCGCGTGCTATGAGATGAAGTGTAACGATGACCCGAGGTGGTGTCTCGGGTC 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 CACGTGTGGCGCGTGCTATGAGATGAAGTGTAACGATGACCCGAGGTGGTGTCTCGGGTC 375
Query 325 TACCATCACCGTCACAGCCACTAACTTTTGCCCACCAAACCCTGGCCTCTCCAACGATAA 384
||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 376 AACCATCACCGTCACAGCTACAAACTTTTGCCCACCTAACCCTGGCCTCTCCAACGATAA 435
Query 385 TGGAGGTTGGTGCAATCCTCCTCTTCAACATTTCGACCTAGCCGAGCCAGCTTTTCTCCA 444
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 436 TGGAGGTTGGTGCAATCCTCCTCTTCAGCATTTCGACCTCGCCGAGCCAGCTTTTCTTCA 495
Query 445 GATCGCTCAGTATCGTGCCGGCATTGTTCCTGTCTCTTTCCGAAGAGTACCATGTATGAA 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 GATCGCTCAGTATCGTGCCGGCATTGTTCCTGTCTCTTTCCGAAGAGTACCATGTATGAA 555
Query 505 GAAAGGAGGAATAAGGTTCACGATCAACGGACATTCATACTTCAACCTCGTCCTGATCTC 564
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 556 GAAAGGAGGAATAAGGTTTACGATCAACGGACACTCATACTTCAACCTCGTTCTGATCTC 615
Query 565 GAACGTAGGAGGAGCAGGAGATGTCCACGCTGTCTCGATCAAAGGCTCAAAAACACAGTC 624
|||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||
Sbjct 616 CAACGTAGGAGGAGCAGGAGACGTACACGCCGTCTCAATCAAAGGCTCAAAAACACAGTC 675
Query 625 GTGGCAAGCAATGTCTAGAAATTGGGGACAAAACTGGCAGAGCAATTCTTACATGAACGA 684
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 676 GTGGCAAGCGATGTCTAGAAACTGGGGACAAAACTGGCAGAGCAATTCATACATGAACGA 735
Query 685 CCAAAGCCTTTCCTTCCAGGTCACCACCAGCGATGGTCGCACACTCGTTAGCAATGACGT 744
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 736 CCAAAGCCTTTCCTTCCAGGTAACGACCAGCGATGGTCGCACACTCGTTAGCAACGACGT 795
Query 745 GGCTCCTTCTAATTGGCAATTCGGACAAACCTACCAAGGCGGTCAATTCTGATC-AGACC 803
|||||||||||||||||| |||||||||||||||||||| ||||| |||||||| | |||
Sbjct 796 GGCTCCTTCTAATTGGCAGTTCGGACAAACCTACCAAGGTGGTCAGTTCTGATCCAAACC 855
Query 804 ATCATCATCCACATCTCT 821
|||||| | ||||||||
Sbjct 856 ATCATC--C-ACATCTCT 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39986381012
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5