BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934913
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40970.1 | Symbols: MYBC1 | Homeodomain-like superfamily pro... 1118 0.0
> AT2G40970.1 | Symbols: MYBC1 | Homeodomain-like superfamily protein
| chr2:17097550-17098695 REVERSE LENGTH=1146
Length=1146
Score = 1118 bits (605), Expect = 0.0
Identities = 734/795 (92%), Gaps = 14/795 (2%)
Strand=Plus/Plus
Query 1 TCACAATCACCGCCGCTAAAATGAGAGAAGATAATCCGAATTGGTTCCTTAGATGGGAAG 60
|||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 158 TCACTATCACCGCAGCTAGAATGAGAGAAGATAATCCAAATTGGTTCCTTAGATGGGAAG 217
Query 61 AGGAGCTTCCATCGCCGGAAGAACTCATCCCTATCTCTCAAACCTTAATCACTCCTCATC 120
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 AAGAGCTTCCATCTCCAGAAGAACTCATCCCTATCTCTCAAACCTTAATCACTCCTCATC 277
Query 121 TAGCTCTCGCTTTCCAAATCGGAAGTCCTAATCATCATCTCGGATCAAAGAGAACCACCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 TAGCTCTCGCTTTCCAAATCGGAAGTCCTAATCATCATCTCGGATCAAAGAGAACCACCG 337
Query 181 CGATTTACCACCAAAAGGTTCAA-CCATCCGCCACTCCGAC---TCCGACTCCAACTCCT 236
||||||| ||||| ||| ||||| || ||| ||||||| || ||| ||||||||||||
Sbjct 338 CGATTTATCACCAGAAGCTTCAATCC-TCCACCACTCCAACAACTCCAACTCCAACTCCT 396
Query 237 CCACCGATGATGATGAATTCTGATTTCGGCGGTGGTGATTCCACGGATCTTGGTTCAGGA 296
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 397 CCACCGATGATGATGAATTCTGATTTCGGCGGTGGCGATTCCACGGATCTTGGTTCAGGA 456
Query 297 TCGATCGGAGGAGAGCCAGCAAGAACGTTGAAACGACCGCGTTTAGTGTGGACGCCTCAG 356
|| || ||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 457 TCAATAGGAGGAGAGCCAGCAAGAACGTTGAAACGGCCGCGTCTAGTGTGGACGCCTCAG 516
Query 357 CTACACAAACGTTTTGTGGACGCAGTCGGACATTTAGGGATCAAAAACGCAGTTCCAAAG 416
|||||||||||||| ||||| || || ||||| |||||||||||||||||||||||||||
Sbjct 517 CTACACAAACGTTTCGTGGATGCGGTTGGACACTTAGGGATCAAAAACGCAGTTCCAAAG 576
Query 417 ACGATAATGCAGCTAATGAGCGTTGAAGGATTGACTAGAGAGAACGTTGCGAGTCATCTT 476
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 ACTATAATGCAGCTTATGAGCGTTGAAGGATTGACTAGAGAGAACGTTGCGAGTCATCTT 636
Query 477 CAGAAATACCGTCTTTACCTTAGGAGAATGCAAGGCGGGAACGGTAACGGAATCTCCGGT 536
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 637 CAGAAATATCGTCTTTACCTTAGGAGAATGCAAGGCGGGAACGGTAACGGAATCACTGGA 696
Query 537 GGACACGTCATCGTCTCCGATTCCGCTACCGATCGGCTATTCGCTAACTCGCCGGTTCCC 596
||||||||||||||||| ||||| ||||| ||||||||||| |||| ||| ||||||||
Sbjct 697 GGACACGTCATCGTCTCTGATTCGGCTACTGATCGGCTATTTGCTAGCTCACCGGTTCCA 756
Query 597 G-TGGATTTCTTGAGCCCTGAGTACTTGATGCCGCCATTACAGCATTCGTATTTGGGGAA 655
| | ||||||||||||| || |||||||||||||||||| ||||||||||| |||||||
Sbjct 757 GCTC-ATTTCTTGAGCCCGGATTACTTGATGCCGCCATTAGAGCATTCGTATATGGGGAA 815
Query 656 ACATGTGATTACGCAGCAAAACCAAGTGGTTCGTAATCTGAGGTATGAAGATTCGGAATA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 ACATGTGATTACGCAGCAAAACCAAGTGGTTCGTAATCTGAGGTATGAAGATTCGGAATA 875
Query 716 TGGTCATGGAGATGGTGCTAGCAAGATTCTTAAGCTCTTCCCTGCCGGAAATTGATGAAT 775
||||||||| | | | | | ||||| ||||||||||||||||||||||||| |||||
Sbjct 876 TGGTCATGGT-A-G-TA-T-G-AAGATGCTTAAGCTCTTCCCTGCCGGAAATTAATGAAA 929
Query 776 TATTTTGAATTGTTA 790
||||| ||||| |||
Sbjct 930 TATTT-GAATTCTTA 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38429122455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5