BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934924
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41040.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1772 0.0
> AT2G41040.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr2:17121376-17123204
FORWARD LENGTH=1322
Length=1322
Score = 1772 bits (959), Expect = 0.0
Identities = 1051/1096 (96%), Gaps = 4/1096 (0%)
Strand=Plus/Plus
Query 1 CCATTTCTCTGCTCTAGTGGCGATGGCCGCACTAACATCTTCTTCTTCTGCTATTACTCT 60
|||||||||||||| | |||||||||| || |||||||||||||||||||||||||||||
Sbjct 108 CCATTTCTCTGCTCAAATGGCGATGGCGGCTCTAACATCTTCTTCTTCTGCTATTACTCT 167
Query 61 CCTCAACAAACCTTTCTTACCTAACCGctcttctttcttctcctctaattcgcactctac 120
||||||||||||||||||||||||||||||||| |||||||||||| |||| || ||| |
Sbjct 168 CCTCAACAAACCTTTCTTACCTAACCGCTCTTCCTTCTTCTCCTCTGATTCACAATCTCC 227
Query 121 tcttctccgattctctgcttctgcctctgttcGTCCCCGTTTTCCATCCGCCGCCATAAG 180
|||||||||||||||||||||| ||||||||||| | |||||||||||||| ||||||||
Sbjct 228 TCTTCTCCGATTCTCTGCTTCTACCTCTGTTCGTTCTCGTTTTCCATCCGCAGCCATAAG 287
Query 181 CACCGTTGCT-CCAGAATCGGACATAAATAAAAATGAAACTCCAAAGATTAAAATAGAGG 239
| |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 288 CGCCGTTGCTCCCA-AATCGGACATAAATAAAAATGAAACTCCAAAGATCGAAATAGAGG 346
Query 240 AAGCTCAAGTGTTCGCGTGTCCTGTTTGCTACCAACCACTTATGAGAAAAGGACCTTCAG 299
|| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 347 AAACTCAAGTGTTCGCGTGTCCTGTTTGCTACGAACCACTTATGAGGAAAGGACCTTCAG 406
Query 300 GTATCAACCTACAAGCAATCTACAGGTCTGGATTCAAGTGTGGACAATGTAACAAGACAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 GTATCAACCTACAAGCAATCTACAGGTCTGGATTCAAGTGTGGACAATGTAACAAGACAT 466
Query 360 ACTCTAGCAAAGATGAATACTTGGATCTTACTGTCACTGCTGATTTGGATGATTATAATG 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 ATTCTAGCAAAGATGAATACTTGGATCTTACTGTCACTGCTGATTTGGATGATTATAATG 526
Query 420 AAGTCAAACCCATTACTACCGAACTCTTTCGGAGTCCATTAGTATCATTTTTGTATGAAA 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 527 AAGTCAAACCCATTACTACCGAGCTCTTTCGGAGTCCATTAGTATCATTTTTGTATGAAA 586
Query 480 GAGGTTGGCGTCAAGCCTTTAAGCGAAGCGGGTTTCCCGGTCCAGATGAAGAGTTTAGAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GAGGTTGGCGTCAAGCCTTTAAGCGAAGCGGGTTTCCCGGTCCAGATGAAGAGTTTAGAA 646
Query 540 TGGCTGAGGAATACTTCAAAGAATCAGAAGGTGGGATTCTTGTGGATGTTAGTTGCGGAA 599
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 647 TGGCTGAGGAATACTTCAAAGAAGCAGAAGGTGGGCTTCTTGTGGATGTTAGTTGCGGAA 706
Query 600 GCGGTTTGTTTTCCCGCAAATTTGCAAAGTCTGGCAAATACTCTGGCGTGATTGCTCTCG 659
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 707 GCGGTTTGTTTTCCCGCAAATTTGCGCAGTCTGGCAAATACTCTGGCGTGATTGCTTTAG 766
Query 660 ATTACTCTGAAAACATGCTTCGTCAATGCAAAGAATTCATCAAAAATGATAATACTTTCG 719
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 767 ACTACTCTGAAAACATGCTTCGTCAGTGCAAAGAATTCATTAAAAATGATAATACTTTCG 826
Query 720 ACAACTCAACTAATATAGCAGTAGTGAGAGCAGATGTTTCTCGCCTCCCTTTCCCATCAG 779
||||||||||||||||||| || ||||||||||| |||||||||||||||||||| || |
Sbjct 827 ACAACTCAACTAATATAGCTGTTGTGAGAGCAGACGTTTCTCGCCTCCCTTTCCCTTCGG 886
Query 780 GTTCTGTTGACGCGGTTCATGCTGGTGCAGCCTTGCACTGTTGGCCTTCTCCTACAAATG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GTTCTGTTGACGCGGTTCATGCTGGTGCAGCCTTGCACTGTTGGCCTTCTCCTACAAATG 946
Query 840 CTATTGCTGAGATCTGTCGTGTTCTAAGAAGCGGAGGTGTGTTTGTCGGGACAACGTTTC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 CTATTGCTGAGATCTGTCGTGTTCTAAGAAGCGGAGGTGTGTTTGTCGGGACAACGTTTC 1006
Query 900 TCAGATACAGCCCTTCGACTCCTTGGATTATTCGTCCTTTCCAATCGAGAATTCTGCAGA 959
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 TCAGATACAGTCCTTCGACTCCTTGGATTATTCGTCCTTTCCAATCGAGAATTCTGCAGA 1066
Query 960 GTTACAATTACTTGATGCAGGATGAGATCAAGGATGTGTGCACATCATGTGGTCTCACAG 1019
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 GCTACAATTACTTGATGCAGGATGAGATCAAGGATGTGTGCACATCATGTGGTCTCACAG 1126
Query 1020 ATTATGAAGATTATATTCAGGATTCTTTTATTATGTTCACTGCTCGCAAGCCTTAAAGAG 1079
||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 1127 ATTATGAAGATTATATTCAGGATTCTTTTATCATGTTTACTGCTCGCAAGCCCTA--GAG 1184
Query 1080 AGCCCTCTATTCATGT 1095
|||||||| |||||||
Sbjct 1185 AGCCCTCTCTTCATGT 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5