BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934938
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41190.1 | Symbols: | Transmembrane amino acid transporter ... 2710 0.0
> AT2G41190.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr2:17167279-17170407 REVERSE LENGTH=2155
Length=2155
Score = 2710 bits (1467), Expect = 0.0
Identities = 1592/1652 (96%), Gaps = 9/1652 (1%)
Strand=Plus/Plus
Query 1 TTAGTTGGCTTTGTTCGGAAAAATGGAGGACAAGAACAATGATAAGGAGAAAAAACCCGA 60
||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 242 TTACTTGGGTTTGTTC-GAAATATGGAGGACAAGAACAATGATAAGGAGAAAAAAACCGA 300
Query 61 CTTTACGTTCGAAGATGACGAAGATAACGAAGATCTAGAAGAGAACAGCAGTAAGTACGA 120
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 CGTTACGTTCGAAGATGACGAAGATAACGAAGATCTAGAAGACAACAGCAGTAAGTACGA 360
Query 121 GAACGACAGTGAAACTGATCAAAGCGATCTCGGAGATCTTCCTGGTGATGC---TGATGG 177
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 361 GAACGACAGTGAAACTGATCAAAGCGATCTCGGAGATCTTCCTGGTGATGCTGTTGATCG 420
Query 178 TGGCGACGACAACGATGAACCTTTCATTTCCCAGGTTCAATGGCCTCAAAGCTTTAGGGA 237
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 TGACGACGACATCGATGAACCTTTCATTTCCCAGGTTCAATGGCCTCAAAGCTTCAGGGA 480
Query 238 AACGACTGATTCTTATACGATTGCTGCATCACCAATCTTCGGGTCGCTCAGGAGTAA--- 294
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 AACGACTGATTCTTATACGATTGCGGCATCACCAATCTTCGGGTCGCTCAGGAGTAATCC 540
Query 295 TCCGAGTTTCTATAGAGCGAGCAGAAGTAATTTAGATGTTGAGTCTAAAGCCCCTTTGCT 354
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 541 TCCGAGTTTCTATAGAGCCAGCAGAAGTAATTTAGATGTTGAGTCAAAAGCACCTTTGCT 600
Query 355 TCCTGAGAGGCATGAAGATTCAGACAAAGCCTCAGCTACACAATCAGCTTGGTCTCATAA 414
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 TCCTGAGAGGCATGATGATTCAGACAAAGCCTCAGCTACACAATCTGCTTGGTCTCATAA 660
Query 415 AGGCTCATTTGCTGACGAATTGCCTATTGGTGGCTATGGATGCAGCGTCACTCAAACCAT 474
||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 661 AGGCTCATTTGCTGAGGAATTGCCCATTGGTGGCTATGGATGCAGCGTCATTCAAACCAT 720
Query 475 TTTCAATGCTATTAATGTAATGGCTGGAGTTGGACTTCTCTCAACACCTTATACAGTGAA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTTCAATGCTATTAATGTAATGGCTGGAGTTGGACTTCTCTCAACACCTTATACAGTGAA 780
Query 535 AGAAGCTGGTTGGGCAAGTATGGTGATTCTTCTCTTATTTGCTGTTATTTGTTGTTACAC 594
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 781 AGAAGCTGGTTGGGCAAGTATGGTAATTCTTCTCTTATTTGCTGTTATTTGTTGTTACAC 840
Query 595 TGCTACTTTAATGAAAGACTGTTTCGAGAACAAGACCGGTATTATCACTTATCCTGATAT 654
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 841 TGCTACTTTAATGAAAGACTGTTTCGAGAACAAGACCGGCATTATCACTTATCCTGATAT 900
Query 655 TGGAGAAGCAGCTTTTGGGAAATATGGTCGTATTCTCATCTGTATGCTATTGTACACAGA 714
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 901 TGGAGAAGCAGCTTTTGGCAAATATGGTCGTATTCTTATCTGTATGCTATTGTACACAGA 960
Query 715 ACTATATTCATATTGTGTTGAATTCATCATTTTGGAAGGAGATAACCTTACCGGGCTTTT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ACTATATTCATATTGTGTTGAATTCATCATTTTGGAAGGAGATAACCTTACCGGGCTTTT 1020
Query 775 CCCTGGTACATCCTTGGATTTGCTCGGGTTCCGACTTGACTCTAAACATTTATTTGGAAT 834
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1021 CCCTGGTACATCCTTGGATTTGCTCGGGTTCCGACTTGACTCTAAGCATTTATTTGGAAT 1080
Query 835 CTTAACTGCTCTCATTGTTCTTCCAACTGTTTGGTTGAAAGATCTACGCATCATTTCCTA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTTAACTGCTCTCATTGTTCTTCCAACTGTTTGGTTGAAAGATCTACGCATCATTTCCTA 1140
Query 895 CCTCTCAGCCGGTGGAGTTATTGCAACCGGTTTGATAGCAGTAAGCGTGTTTTTCCTCGG 954
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1141 CCTCTCAGCCGGTGGAGTTATCGCAACCGCTTTGATAGCAGTAAGCGTGTTTTTCCTCGG 1200
Query 955 CACAACGGGTGGGATTGGGTTTCATCACACCGGGCAGGCTGTGAAATGGAATGGTATACC 1014
|||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1201 TACAACGGGCGGGATTGGGTTTCATCACACCGGGCAGGCTGTGAAATGGAACGGGATACC 1260
Query 1015 ATTTGCAATTGGTATATACGGGTTTTGCTATTCAGGACATTCAGTGTTCCCAAATATATA 1074
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GTTTGCAATTGGTATATACGGGTTTTGCTATTCAGGACATTCAGTGTTCCCAAATATATA 1320
Query 1075 CCAATCCATGGCTGATAAAACCAAATTCAACAAAGCAGTGATCACATGTTTCATTTTATG 1134
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1321 CCAATCCATGGCTGATAAAACCAAATTCAACAAAGCAGTGATCACTTGTTTCATTATATG 1380
Query 1135 TGTTTTGTTATACGGAGGAGTTGCAATCATGGGTTATCTCATGTTTGGTGAAGCTACCTT 1194
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1381 TGTTTTGTTATACGGAGGAGTTGCAATCATGGGTTATCTCATGTTTGGAGAAGCTACCTT 1440
Query 1195 GTCTCAGATTACACTAAACATGCCACAGAACCAATTTTTCTCAAAAGTGGCACAGTGGAC 1254
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1441 GTCTCAGATTACACTAAACATGCCACAGGACCAATTTTTCTCAAAAGTGGCACAGTGGAC 1500
Query 1255 AACGGTTGTGAATCCGTTTACAAAATACGCTCTCCTGATGAATCCACTTGCCAGGAGTAT 1314
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1501 AACGGTTGTGAGTCCGTTTACAAAATACGCTCTCCTGATGAATCCACTTGCAAGGAGTAT 1560
Query 1315 AGAAGAACTATTACCTGAAAGAATGTCAGAGAACATATGGTGCTTTCTTCTTCTAAGAAC 1374
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 AGAAGAACTATTACCGGAAAGAATGTCAGAGAACATATGGTGCTTTCTTCTTCTAAGAAC 1620
Query 1375 AGGACTCGTCGCTTCCTCTGTTTGTTCTGCTTTCCTTATCCCATTTTTTGGTCTTATGAT 1434
|| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1621 AGCACTCGTCGCTTCTTCTGTTTGTTCTGCTTTCCTTATTCCATTTTTTGGTCTTATGAT 1680
Query 1435 GGCTCTTATAGGATCTCTTCTCAGTATACTCGTGGCAATAGTAATGCCAGCTCTATGCTT 1494
|||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||
Sbjct 1681 GGCTCTTATAGGATCTCTTCTCAGTATACTAGTGGCAATAATAATGCCAGCTTTATGCTT 1740
Query 1495 CATAAAGATAATGGGGAACAAAGCTACTAGAACACAGATGATTCTGAGTTCGA-CAATTG 1553
|||||||||||||||||||||||| || ||||||||||||||||||||||||| || |||
Sbjct 1741 CATAAAGATAATGGGGAACAAAGCAACAAGAACACAGATGATTCTGAGTTCGATCA-TTG 1799
Query 1554 TGGCCATCGGGTTGGTAAGCGGAACCTTGGGGACATATTCTTCGGTTGCAAAGATCATTA 1613
||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1800 TGGCCATCGGGGTGGTAAGCGGGACCTTGGGGACATATTCTTCGGTGGCAAAGATCATTA 1859
Query 1614 GGAACTATCAATGAAGAAACTCCATGACAAAG 1645
|||||||||| ||||| |||||||||||||||
Sbjct 1860 GGAACTATCAGTGAAGGAACTCCATGACAAAG 1891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81375083445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5