BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934965
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41380.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1242 0.0
AT2G41391.1 | Symbols: | Pseudogene of AT2G41380; embryo-abund... 189 4e-47
> AT2G41380.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr2:17251941-17253057
FORWARD LENGTH=1021
Length=1021
Score = 1242 bits (672), Expect = 0.0
Identities = 763/807 (95%), Gaps = 5/807 (1%)
Strand=Plus/Plus
Query 20 AACAAATGGCGAAATTATTCATCAAGCAAGCGGAGCAATACGCAGCAGCCCGACCGAGTT 79
||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 37 AAC-AATGGCGAAATTATTCATCAAGCAAGCAGAGCAATATGCAGCAGCCCGACCCAGTT 95
Query 80 ACCCGACCAAACTCTTCGAATATATCGCATCGAAAACACCGTGCCACGACCTTGCTTGGG 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 96 ACCCCACCAAACTCTTCGAATATATCGCATCGAAAACACCGTGCCACGACCTTGCCTGGG 155
Query 140 ACGTCGGCGCCGGAAGCGGTCAAGCCTCACGATGGCTAGCCGGAATCTACAAGAACGTGA 199
|||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 156 ACGTTGGCGCCGGAAGCGGCCAAGCCTCACGATCGCTAGCCGGAATCTACAAGAACGTGA 215
Query 200 TTGCTACCGACACGAGCTCGAAGCAACTTGAATTTGCTGCAAAGCTTCCCAACGTCCGTT 259
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 216 TTGCTACAGACACGAGCTCAAAGCAACTTGAATTTGCTGCAAAGCTTCCCAACGTCCGTT 275
Query 260 ACGAGATCACTCCACCAACGATGTCTTCATTGGAGATAGAGAAGCTAGTAGCACCTGAAT 319
|||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 276 ACGAGATCACTCCACCGACGATGTCTTCATCGGAGATCGAGAAGCTAGTAGCACCTGAAT 335
Query 320 CATCAGTCGATTTAGTCACCGTCGCACAAGCCCTTCATTGGTTCGACCTCACGAACTTTT 379
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 336 CATCAGTTGATTTAGTCACCGTCGCTCAAGCCCTTCATTGGTTCGACCTCACGAACTTTT 395
Query 380 ACAGCAACGTGAAACACGTGCTCAAGAAACCCAACGGAGTAATCGCCGCCTGGTGCTACA 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 ACAGCAACGTGAAACACGTGCTCAAGAAACCCAACGGAGTAATCGCCGCCTGGTGCTACA 455
Query 440 CCAATCCGGAGGTTAACGCCGCCGTGGACAAGGT-TTTCCAACGGTTTTACGATGAGAAA 498
|||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct 456 CCAATCCGGAAGTTAACGACGCCGTGGACAAGGTCTTTC-AACGGTTTTACGATGAGAAA 514
Query 499 CTTGGCCCTCATTGGGATAAAGCGAGGCGGCTTGTGGAGGATGGGTACAGAGGAATTGAG 558
||||| |||||||||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 515 CTTGGTCCTCATTGGGATCTAGCGCGACGGCTTGTGGAGGATGGGTACAGAGGAATTGAG 574
Query 559 TTCCCGTTCGAGAAGGTGGATAATGATGAGTCAACGGAAAGTCAAAGTTTGCCGATAAGG 618
|| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 575 TTTCCGTTCGAGAAAGTGGATAATGATGAGTCAACGGAAAGTCAAAGTTTTCCGGTGAGG 634
Query 619 TTCGTGACTGAGAAAGAAATGGTGTTTGAAGAGTATATGACTTATCTGAGGTCATCTTCG 678
|| || || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 635 TTTGTAACGGAGAAAGAAATGGTGTTTGAAGAGTATATGACGTATCTGAGGTCATCTTCG 694
Query 679 GCGTATCAGACGGCTAAGGAGAAAGGTTTAGAGCTTTTGACGACGGAGATGGAAGGAGAA 738
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 695 GCGTATCAGACGGCTAAGGAGAAAGGTTTAGAGCTTTTGACGGCTGAGATGGAAGGAGAG 754
Query 739 TTTGCTGATTCGTGGAAAGAAGATGGGAAGGAGAAGAAAGTTGTTAGGTTTCCGATTCA- 797
||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| |
Sbjct 755 TTTGCTGGTTCGTGGAAAGAAGATGGGAAAGAGAAGAAAGTTGTTAGGTATCCGATTTAT 814
Query 798 CTTGTTGATCGGAAGAGTTGGAGAAGA 824
|| ||||||||||||||||| ||||||
Sbjct 815 CT-GTTGATCGGAAGAGTTGCAGAAGA 840
> AT2G41391.1 | Symbols: | Pseudogene of AT2G41380; embryo-abundant
protein-related | chr2:17258352-17258612 FORWARD LENGTH=261
Length=261
Score = 189 bits (102), Expect = 4e-47
Identities = 126/138 (91%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 298 GAGAAGCTAGTAGCACCTGAATCATCAGTCGATTTAGTCACCGTCGCACAAGCCCTTCAT 357
||| ||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 48 GAGCAGCTAGTGGCGCCGGAATCATCAGTCGATTTAGTCACCGTCGCACAAGCCCTTCAC 107
Query 358 TGGTTCGACCTCACGAACTTTTACAGCAACGTGAAACACGTGCTCAAGAAACCCAACGGA 417
|| ||| || |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 TGATTCAACTTCACCACCTTTTACAGCAACGTGAAACACGTGCTCAAGAAACCCAACGGG 167
Query 418 GTAATCGCCGCCTGGTGC 435
||||| ||||||||||||
Sbjct 168 GTAATTGCCGCCTGGTGC 185
Score = 111 bits (60), Expect = 8e-24
Identities = 80/89 (90%), Gaps = 3/89 (3%)
Strand=Plus/Plus
Query 457 GCCGCCGTGG-ACAAGGTTTTCCAACGGTTTTACGATGAG-AAACTTGGCCCTCATTGGG 514
|||||| ||| |||| |||||| ||||||||||| |||| |||||||||||||||||||
Sbjct 174 GCCGCC-TGGTGCAAGATTTTCCGACGGTTTTACGTTGAGAAAACTTGGCCCTCATTGGG 232
Query 515 ATAAAGCGAGGCGGCTTGTGGAGGATGGG 543
|||||||||||||||| ||||| ||||||
Sbjct 233 ATAAAGCGAGGCGGCTAGTGGAAGATGGG 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41644107863
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5