BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934997
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41630.1 | Symbols: TFIIB | transcription factor IIB | chr2:... 1594 0.0
> AT2G41630.1 | Symbols: TFIIB | transcription factor IIB | chr2:17355331-17357598
REVERSE LENGTH=1361
Length=1361
Score = 1594 bits (863), Expect = 0.0
Identities = 943/982 (96%), Gaps = 3/982 (0%)
Strand=Plus/Plus
Query 1 TTAGGGTTTTC-TTTGAAATCATGTCGGATGCGTATTGTACGGATTGTAAAAAGGAGACG 59
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TTAGGGTTTTCATTTGGAATCATGTCGGATGCGTATTGTACGGATTGTAAAAAGGAGACG 237
Query 60 GAGTTGGTGGTCGATCACTCAGCCGGAGATACCCTTTGCTCCGAGTGTGGTTTGGTTTTG 119
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAGTTGGTTGTCGATCACTCAGCCGGAGATACCCTTTGCTCCGAGTGTGGTTTGGTTTTG 297
Query 120 GAATCTCACTCCATTGATGAGACCTCTGAGTGGCGTACCTTCGCTAATGAATCTTCCAAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAATCTCACTCCATTGATGAGACCTCTGAGTGGCGTACCTTCGCTAATGAATCTTCCAAC 357
Query 180 AGCGATCCCAATCGTGTCGGTGGTCCAACCAATCCGCTTCTCGCCGATAGTGCTCTCACC 239
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||
Sbjct 358 AGCGATCCCAATCGTGTCGGTGGTCCAACCAACCCGCTTCTCGCTGATAGTGCTTTAACC 417
Query 240 ACTGTTATCGCTAAGCCCAATGGTTCCTCCGGTGATTTCCTGTCTTCTTCTCTCGGGAGG 299
|||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct 418 ACTGTTATCGCTAAGCCCAATGGTTCATCTGGTGATTTCTTGTCTTCTTCTCTCGGGAGG 477
Query 300 TGGCAGAATCGTAACTCCAATTCCGATCGTGGTTTGATTCAAGCGTTTAAAACCATTGCT 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 478 TGGCAGAATCGTAACTCCAATTCCGATCGTGGTTTGATTCAAGCTTTTAAAACCATTGCT 537
Query 360 ACCATGTCTGAAAGGTTGGGACTTGTTGCGACTATCAAGGATCGGGCTAATGAGATATAT 419
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 538 ACCATGTCTGAAAGGTTGGGACTTGTTGCAACTATCAAGGATCGGGCTAATGAGTTATAT 597
Query 420 AAGAGGCTGGAGGATCAAAAGACAACCAGGGGAAGAAATCAGGATGCACTCTATGCAGCC 479
||||||||||||||||| ||| ||| |||||||||||||||||||||||| |||||||||
Sbjct 598 AAGAGGCTGGAGGATCAGAAGTCAAGCAGGGGAAGAAATCAGGATGCACTTTATGCAGCC 657
Query 480 TGCCTGTACATTGCCTGTCGCCAAGAGGACAAGCCACGAACCATTAAGGAAATATGCGTT 539
|| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 658 TGTCTGTACATTGCTTGTCGCCAAGAGGACAAGCCACGAACTATTAAGGAAATATGCGTT 717
Query 540 ATTGCCAATGGTGCGACAAAGAAGGAAATTGGCCGAGCAAAAGACTACATTGTTAAGACA 599
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATTGCCAATGGGGCGACAAAGAAGGAAATTGGCCGAGCAAAAGACTACATTGTTAAGACA 777
Query 600 TTGGGACTGGATCCTGGTCAGTCTGTGGAACTAGGCACAATACACGCTGGTGATTTCATG 659
||||||||||| ||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 778 TTGGGACTGGAGCCTGGTCAGTCTGTGGATTTAGGAACTATACACGCTGGTGATTTCATG 837
Query 660 AGAAGGTTCTGCTCCAACCTTGGAATGTCTAACCATGCGGTTAAAGCTGCTCAGGAAGCT 719
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 838 AGAAGGTTCTGCTCCAACCTTGCAATGTCTAACCATGCGGTGAAAGCTGCTCAGGAAGCT 897
Query 720 GTGCAAAAATCTGAGGAATTTGATATAAGGAGGAGTCCTATATCAATAGCAGCAGTAGTT 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTGCAAAAATCTGAGGAATTTGATATAAGGAGGAGTCCTATATCAATAGCAGCAGTAGTC 957
Query 780 ATCTACATCATAACCCAGCTTTCTGATGACAAGAAGACTCTCAAAGATATATCGACA-GC 838
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 958 ATCTATATCATAACCCAGCTGTCTGATGACAAGAAGACTCTCAAAGATATATCG-CATGC 1016
Query 839 GACAGGAGTAGCAGAAGGGACAATAAGAAATTCATACAAAGACTTGTACCCACATCTGGC 898
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct 1017 GACAGGAGTAGCAGAAGGGACAATAAGGAATTCATACAAAGACTTGTATCCACATCTGTC 1076
Query 899 AAAGATAGCACCAAGTTGGTATGCTAAGGAAGAGGATCTTAAAAACCTGTCAAGTCCTTG 958
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1077 AAAGATAGCACCAAGTTGGTATGCAAAGGAAGAGGATCTGAAAAACCTGTCAAGTCCTTG 1136
Query 959 AAGTTGTTTCTTGATTCTTCTA 980
|||| |||||||||||||||||
Sbjct 1137 AAGTCGTTTCTTGATTCTTCTA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47973610385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5