BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935085
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42240.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1349 0.0
> AT2G42240.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17596817-17599113 FORWARD LENGTH=1138
Length=1138
Score = 1349 bits (730), Expect = 0.0
Identities = 782/808 (97%), Gaps = 0/808 (0%)
Strand=Plus/Plus
Query 43 ACTATAATCTACCGGCGATTGTTCCTCCTCCGCAGCCGGGGGTGGCTCCGATTCCAATTA 102
|||||||| |||||||||| ||||||||||||| |||||| || |||||||||||||||
Sbjct 56 ACTATAATTTACCGGCGATGGTTCCTCCTCCGCCGCCGGGAGTTTCTCCGATTCCAATTA 115
Query 103 CTTCCGCTCATTCCGtttttttGCCTACACATGTCTCAATCGGAGCTCGCGATGAGGTTC 162
|||| ||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 116 CTTCAGCTCATTCCGTCTATTTGCCTACCCATGTCTCAATTGGAGCTCGCGATGAGGTTA 175
Query 163 GGACGCTTTTCGTCGCCGGACTTCCTGAAGATGTCAAGCCTCGGGAGATCTACAATCTCT 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GGACGCTTTTCGTCGCCGGACTTCCTGAAGATGTCAAGCCTCGGGAGATCTACAATCTCT 235
Query 223 TTCGTGAGTTCCCAGGATATGAGACTTCACATCTCCGGAGCTCAGATGGAGCTAAGCCCT 282
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 236 TTCGTGAGTTCCCAGGATATGAGACTTCGCATCTCCGGAGCTCAGATGGAGCTAAGCCCT 295
Query 283 TTGCATTTGCTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAATG 342
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCGCATTTGCTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAATG 355
Query 343 GAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCAAATCAAATC 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCAAATCAAATC 415
Query 403 CCAAATCTAAGCGTTCAAGAACAGATGATGGTTGGGAAAGCTTGAAAAAACCCAAGCCTT 462
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 416 CCAAATCTAAGCGTTCAAGAACAGATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTT 475
Query 463 GGAGCACCACTACTGAATCTGGTTTTGGCAGCTTTCACACTCCTGGAATGAGTAGTTCTA 522
||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 476 GGAACACTACTACTGAATCTGGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTG 535
Query 523 CTTACAACACAATTGGTTATTCACCTGCACAAAGTCAAGGAATTGCTAATGTTGCTGGGA 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CTTACAACACAATTGGTTATTCACCTGCACAAAGTCAAGGAATTGCTAATGTTGCTGGGA 595
Query 583 GGGCACCGACTACTAGAAAATCTAATAATGCGGCAGATCCTTGTCCAACACTTTTCATAG 642
||||||||||| |||||||| ||| ||| |||||||||||||||||||||||||||||||
Sbjct 596 GGGCACCGACTTCTAGAAAACCTAGTAAGGCGGCAGATCCTTGTCCAACACTTTTCATAG 655
Query 643 CGAATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGATGCCGTG 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CGAATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGATGCCGTG 715
Query 703 GATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCC 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCC 775
Query 763 AGGACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAATGCTTTACTCAT 822
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 776 AGGACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAGTGCTTTACTCAT 835
Query 823 CCCTCACTGGGGAAGGTTTGAGGCTGCA 850
||||||||||||||| ||||||||||||
Sbjct 836 CCCTCACTGGGGAAGTTTTGAGGCTGCA 863
Score = 80.5 bits (43), Expect = 3e-14
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 851 ATCACGGATGGGAATGCGTAAGAAGATTAGTTAGTGTTAAAATTCATTAAGCACTGAT 908
||||||||||||||||||||||||||||| |||| |||| |||| ||||||| |||||
Sbjct 964 ATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAATTGATTAAGCTCTGAT 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44457220095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5