BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935085

Length=910
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42240.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...  1349    0.0  


> AT2G42240.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr2:17596817-17599113 FORWARD LENGTH=1138
Length=1138

 Score = 1349 bits (730),  Expect = 0.0
 Identities = 782/808 (97%), Gaps = 0/808 (0%)
 Strand=Plus/Plus

Query  43   ACTATAATCTACCGGCGATTGTTCCTCCTCCGCAGCCGGGGGTGGCTCCGATTCCAATTA  102
            |||||||| |||||||||| ||||||||||||| |||||| ||  |||||||||||||||
Sbjct  56   ACTATAATTTACCGGCGATGGTTCCTCCTCCGCCGCCGGGAGTTTCTCCGATTCCAATTA  115

Query  103  CTTCCGCTCATTCCGtttttttGCCTACACATGTCTCAATCGGAGCTCGCGATGAGGTTC  162
            |||| ||||||||||| | ||||||||| ||||||||||| |||||||||||||||||| 
Sbjct  116  CTTCAGCTCATTCCGTCTATTTGCCTACCCATGTCTCAATTGGAGCTCGCGATGAGGTTA  175

Query  163  GGACGCTTTTCGTCGCCGGACTTCCTGAAGATGTCAAGCCTCGGGAGATCTACAATCTCT  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  176  GGACGCTTTTCGTCGCCGGACTTCCTGAAGATGTCAAGCCTCGGGAGATCTACAATCTCT  235

Query  223  TTCGTGAGTTCCCAGGATATGAGACTTCACATCTCCGGAGCTCAGATGGAGCTAAGCCCT  282
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  236  TTCGTGAGTTCCCAGGATATGAGACTTCGCATCTCCGGAGCTCAGATGGAGCTAAGCCCT  295

Query  283  TTGCATTTGCTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAATG  342
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  296  TCGCATTTGCTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAATG  355

Query  343  GAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCAAATCAAATC  402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  356  GAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCAAATCAAATC  415

Query  403  CCAAATCTAAGCGTTCAAGAACAGATGATGGTTGGGAAAGCTTGAAAAAACCCAAGCCTT  462
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct  416  CCAAATCTAAGCGTTCAAGAACAGATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTT  475

Query  463  GGAGCACCACTACTGAATCTGGTTTTGGCAGCTTTCACACTCCTGGAATGAGTAGTTCTA  522
            ||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct  476  GGAACACTACTACTGAATCTGGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTG  535

Query  523  CTTACAACACAATTGGTTATTCACCTGCACAAAGTCAAGGAATTGCTAATGTTGCTGGGA  582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  536  CTTACAACACAATTGGTTATTCACCTGCACAAAGTCAAGGAATTGCTAATGTTGCTGGGA  595

Query  583  GGGCACCGACTACTAGAAAATCTAATAATGCGGCAGATCCTTGTCCAACACTTTTCATAG  642
            ||||||||||| |||||||| ||| ||| |||||||||||||||||||||||||||||||
Sbjct  596  GGGCACCGACTTCTAGAAAACCTAGTAAGGCGGCAGATCCTTGTCCAACACTTTTCATAG  655

Query  643  CGAATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGATGCCGTG  702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  656  CGAATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGATGCCGTG  715

Query  703  GATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCC  762
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  716  GATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCC  775

Query  763  AGGACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAATGCTTTACTCAT  822
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  776  AGGACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAGTGCTTTACTCAT  835

Query  823  CCCTCACTGGGGAAGGTTTGAGGCTGCA  850
            ||||||||||||||| ||||||||||||
Sbjct  836  CCCTCACTGGGGAAGTTTTGAGGCTGCA  863


 Score = 80.5 bits (43),  Expect = 3e-14
 Identities = 53/58 (91%), Gaps = 0/58 (0%)
 Strand=Plus/Plus

Query  851   ATCACGGATGGGAATGCGTAAGAAGATTAGTTAGTGTTAAAATTCATTAAGCACTGAT  908
             ||||||||||||||||||||||||||||| |||| |||| |||| ||||||| |||||
Sbjct  964   ATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAATTGATTAAGCTCTGAT  1021



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44457220095


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5