BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935085 Length=910 Score E Sequences producing significant alignments: (Bits) Value AT2G42240.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1349 0.0 > AT2G42240.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:17596817-17599113 FORWARD LENGTH=1138 Length=1138 Score = 1349 bits (730), Expect = 0.0 Identities = 782/808 (97%), Gaps = 0/808 (0%) Strand=Plus/Plus Query 43 ACTATAATCTACCGGCGATTGTTCCTCCTCCGCAGCCGGGGGTGGCTCCGATTCCAATTA 102 |||||||| |||||||||| ||||||||||||| |||||| || ||||||||||||||| Sbjct 56 ACTATAATTTACCGGCGATGGTTCCTCCTCCGCCGCCGGGAGTTTCTCCGATTCCAATTA 115 Query 103 CTTCCGCTCATTCCGtttttttGCCTACACATGTCTCAATCGGAGCTCGCGATGAGGTTC 162 |||| ||||||||||| | ||||||||| ||||||||||| |||||||||||||||||| Sbjct 116 CTTCAGCTCATTCCGTCTATTTGCCTACCCATGTCTCAATTGGAGCTCGCGATGAGGTTA 175 Query 163 GGACGCTTTTCGTCGCCGGACTTCCTGAAGATGTCAAGCCTCGGGAGATCTACAATCTCT 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 GGACGCTTTTCGTCGCCGGACTTCCTGAAGATGTCAAGCCTCGGGAGATCTACAATCTCT 235 Query 223 TTCGTGAGTTCCCAGGATATGAGACTTCACATCTCCGGAGCTCAGATGGAGCTAAGCCCT 282 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 236 TTCGTGAGTTCCCAGGATATGAGACTTCGCATCTCCGGAGCTCAGATGGAGCTAAGCCCT 295 Query 283 TTGCATTTGCTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAATG 342 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 TCGCATTTGCTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAATG 355 Query 343 GAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCAAATCAAATC 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 GAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCAAATCAAATC 415 Query 403 CCAAATCTAAGCGTTCAAGAACAGATGATGGTTGGGAAAGCTTGAAAAAACCCAAGCCTT 462 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 416 CCAAATCTAAGCGTTCAAGAACAGATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTT 475 Query 463 GGAGCACCACTACTGAATCTGGTTTTGGCAGCTTTCACACTCCTGGAATGAGTAGTTCTA 522 ||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 476 GGAACACTACTACTGAATCTGGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTG 535 Query 523 CTTACAACACAATTGGTTATTCACCTGCACAAAGTCAAGGAATTGCTAATGTTGCTGGGA 582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 CTTACAACACAATTGGTTATTCACCTGCACAAAGTCAAGGAATTGCTAATGTTGCTGGGA 595 Query 583 GGGCACCGACTACTAGAAAATCTAATAATGCGGCAGATCCTTGTCCAACACTTTTCATAG 642 ||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||| Sbjct 596 GGGCACCGACTTCTAGAAAACCTAGTAAGGCGGCAGATCCTTGTCCAACACTTTTCATAG 655 Query 643 CGAATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGATGCCGTG 702 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 CGAATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGATGCCGTG 715 Query 703 GATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCC 762 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 GATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCC 775 Query 763 AGGACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAATGCTTTACTCAT 822 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 776 AGGACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAGTGCTTTACTCAT 835 Query 823 CCCTCACTGGGGAAGGTTTGAGGCTGCA 850 ||||||||||||||| |||||||||||| Sbjct 836 CCCTCACTGGGGAAGTTTTGAGGCTGCA 863 Score = 80.5 bits (43), Expect = 3e-14 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 851 ATCACGGATGGGAATGCGTAAGAAGATTAGTTAGTGTTAAAATTCATTAAGCACTGAT 908 ||||||||||||||||||||||||||||| |||| |||| |||| ||||||| ||||| Sbjct 964 ATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAATTGATTAAGCTCTGAT 1021 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44457220095 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5