BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935133 Length=1100 Score E Sequences producing significant alignments: (Bits) Value AT2G42500.1 | Symbols: PP2A-3 | protein phosphatase 2A-3 | chr2... 1905 0.0 AT3G58500.1 | Symbols: PP2A-4 | protein phosphatase 2A-4 | chr3... 1389 0.0 > AT2G42500.1 | Symbols: PP2A-3 | protein phosphatase 2A-3 | chr2:17697667-17701417 REVERSE LENGTH=1565 Length=1565 Score = 1905 bits (1031), Expect = 0.0 Identities = 1078/1100 (98%), Gaps = 5/1100 (0%) Strand=Plus/Plus Query 1 GAAGAATACGCAGATTCCATCCAATTTAGGGTTAGGGCTTCCCCTAATTTGGAAACCTAG 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 81 GAAGAATACGCAGATTCCATCCAATTTAGGGTTAGGACTTCCCCTAATTTGGAAACCTAG 140 Query 61 TCCTGTTTCCTGATCTGTTTTCCGGATCGGACGAGAGGAGAGACGAAGTAACGAAAATGG 120 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 141 TCCTGTTTCCTGATCTGTTTTCCGGATCGGAC-----GAGAGACGAATTAACGAAAATGG 195 Query 121 GCGCGAATTCTATTCCGACGGACGCAACCATTGATCTTGATGAGCAGATCTCGCAGCTTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 196 GCGCGAATTCTATTCCGACGGACGCAACCATTGATCTTGATGAGCAGATCTCGCAGCTCA 255 Query 181 TGCAGTGCAAGCCTCTCTCGGAGCAACAGGTTAGAGCATTATGCGAGAAAGCCAAGGAGA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 256 TGCAGTGCAAGCCTCTCTCGGAGCAACAGGTTAGAGCATTATGCGAGAAAGCCAAGGAGA 315 Query 241 TCTTAATGGATGAAAGCAACGTTCAGCCTGTGAAAAGCCCTGTGACAATCTGCGGTGATA 300 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 316 TCTTAATGGATGAAAGCAATGTTCAGCCTGTGAAAAGCCCTGTGACAATCTGCGGTGATA 375 Query 301 TTCATGGACAGTTCCATGATCTTGCTGAGCTTTTCCGTATAGGGGGAATGTGCCCTGATA 360 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 376 TTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGTATAGGGGGAATGTGCCCTGATA 435 Query 361 CCAATTATCTGTTTATGGGAGACTATGTGGACCGCGGTTATTATTCTGTTGAAACTGTTA 420 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 436 CCAATTACCTGTTTATGGGAGACTATGTGGACCGTGGTTATTATTCTGTTGAAACTGTTA 495 Query 421 CGCTGTTAGTCGCCTTAAAGATGCGATATCCTCAGCGAATCACTATTCTTAGAGGAAACC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 496 CGCTGTTAGTCGCCTTAAAGATGCGATATCCTCAGCGAATCACTATTCTTAGAGGAAACC 555 Query 481 ATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAATGTCTGCGAAAGTACG 540 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 556 ATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAATGTCTACGAAAGTACG 615 Query 541 GCAACGCAAATGTTTGGAAAATCTTTACAGACCTCTTCGACTATTTTCCTCTGACAGCCT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 616 GCAACGCAAATGTTTGGAAAATCTTTACAGACCTCTTCGACTATTTTCCTCTGACAGCCT 675 Query 601 TGGTTGAGTCAGAAATATTTTGCCTTCATGGTGGATTATCTCCATCTATCGAGACCCTTG 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 676 TGGTTGAGTCAGAAATATTTTGCCTTCATGGTGGATTATCTCCATCTATCGAGACCCTTG 735 Query 661 ACAACATAAGGAATTTTGATCGAGTTCAAGAAGTTCCCCATGAAGGGCCAATGTGTGACT 720 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 736 ACAACATAAGGAATTTTGATCGAGTTCAAGAAGTGCCCCATGAAGGGCCGATGTGTGACT 795 Query 721 TATTATGGTCTGACCCCGATGACCGATGTGGTTGGGGCATCTCTCCTCGAGGTGCCGGAT 780 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 796 TATTATGGTCTGACCCCGATGACCGATGTGGTTGGGGCATCTCTCCTCGGGGTGCCGGAT 855 Query 781 ATACGTTTGGTCAGGATATATCCGAACAATTCAATCACACAAACAACTTAAAGCTGATCG 840 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 856 ATACATTTGGTCAGGATATATCTGAACAATTCAATCACACAAACAACTTAAAGCTGATCG 915 Query 841 CCCGAGCTCACCAGTTGGTTATGGATGGATACAACTGGGCTCACGAGCAAAAAGTGGTTA 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 916 CCCGAGCTCACCAGTTGGTTATGGATGGATACAACTGGGCTCACGAGCAAAAAGTGGTTA 975 Query 901 CTATTTTCAGTGCACCAAACTATTGTTATCGTTGTGGGAACATGGCCTCGATTCTTGAGG 960 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 976 CTATTTTCAGTGCACCAAACTATTGTTACCGTTGTGGGAACATGGCCTCGATTCTTGAGG 1035 Query 961 TCGACGACTGCAGGAACCACACCTTCATTCAGTTTGAACCAGCACCGAGGAGAGGAGAAC 1020 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1036 TCGACGACTGCAGGAACCACACCTTCATCCAGTTTGAACCAGCACCGAGGAGAGGAGAAC 1095 Query 1021 CAGATGTCACCCGAAGGACTCCAGACTATTTTCTGTGATCACTGGACACAGACTCATCTC 1080 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1096 CAGACGTCACCCGAAGGACTCCAGACTATTTCCTGTGATCACTGGACACAGACTCATCTC 1155 Query 1081 AATCAGCAGCTGCAGGCACC 1100 |||||||||||||||||||| Sbjct 1156 AATCAGCAGCTGCAGGCACC 1175 > AT3G58500.1 | Symbols: PP2A-4 | protein phosphatase 2A-4 | chr3:21635226-21639105 REVERSE LENGTH=1413 Length=1413 Score = 1389 bits (752), Expect = 0.0 Identities = 969/1073 (90%), Gaps = 18/1073 (2%) Strand=Plus/Plus Query 1 GAAGAATACGCAGATTCCATCCAATTTAGGGTTAGGGCTTCCCCTAATTTGGAAACC-TA 59 |||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| | Sbjct 67 GAAGAATACGCAGAATCCATCCAATTTAGGGTTAGGGCTGCCCCTAATCTGGAAACCTTT 126 Query 60 GTCCT-GTTTCCTGATCTGTTTTCCGGATCGGAC--G-A-G--AG--GA-GA-GACGAAG 108 | ||| |||| ||||||||||||||||||| ||| | | | || || || |||| | Sbjct 127 G-CCTCGTTT-CTGATCTGTTTTCCGGATCCGACTTGAAGGAAAGAAGACGACGACGCAC 184 Query 109 TAAC-GAAA-ATGGGCGCGAATTCTATTCCGACGGACGCAACCATTGATCTTGATGAGCA 166 || | ||| |||||||||||||| |||| ||||| |||||| | ||||| |||||||| Sbjct 185 TACCAAAAACATGGGCGCGAATTCGCTTCCAACGGATGCAACCCTCGATCTAGATGAGCA 244 Query 167 GATCTCGCAGCTTATGCAGTGCAAGCCTCTCTCGGAGCAACAGGTTAGAGCATTATGCGA 226 |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| || Sbjct 245 GATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAGCAACAGGTCAGAGCATTATGTGA 304 Query 227 GAAAGCCAAGGAGATCTTAATGGATGAAAGCAACGTTCAGCCTGTGAAAAGCCCTGTGAC 286 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 305 GAAAGCTAAGGAGATCTTAATGGATGAAAGCAACGTTCAGCCTGTTAAAAGCCCTGTGAC 364 Query 287 AATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCTGAGCTTTTCCGTATAGGGGG 346 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 365 AATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGTATTGGGGG 424 Query 347 AATGTGCCCTGATACCAATTATCTGTTTATGGGAGACTATGTGGACCGCGGTTATTATTC 406 || ||| ||||||||||| ||||||||||||||||||||||| ||||| || |||||||| Sbjct 425 AAAGTGTCCTGATACCAACTATCTGTTTATGGGAGACTATGTCGACCGTGGATATTATTC 484 Query 407 TGTTGAAACTGTTACGCTGTTAGTCGCCTT-AAAGATGCGATATCCTCAGCGAATCACTA 465 ||| ||||||||||||||||| || | ||| |||| | || ||||| ||||||||||||| Sbjct 485 TGTGGAAACTGTTACGCTGTTGGTTGGCTTGAAAG-TACGGTATCCACAGCGAATCACTA 543 Query 466 TTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAAT 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 TTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAAT 603 Query 526 GTCTGCGAAAGTACGGCAACGCAAATGTTTGGAAAATCTTTACAGACCTCTTCGACTATT 585 ||||||||||||| ||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct 604 GTCTGCGAAAGTATGGCAATGCAAATGTTTGGAAGATATTTACAGACCTCTTTGACTATT 663 Query 586 TTCCTCTGACAGCCTTGGTTGAGTCAGAAATATTTTGCCTTCATGGTGGATTATCTCCAT 645 | || |||||||||||||| ||||| |||||||| |||||||| ||||||||||| |||| Sbjct 664 TCCCACTGACAGCCTTGGTGGAGTCGGAAATATTCTGCCTTCACGGTGGATTATCACCAT 723 Query 646 CTATCGAGACCCTTGACAACATAAGGAATTTTGATCGAGTTCAAGAAGTTCCCCATGAAG 705 | |||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||| Sbjct 724 CCATCGAGACCCTTGACAACATTAGGAACTTTGATCGGGTTCAAGAAGTTCCACATGAAG 783 Query 706 GGCCAATGTGTGACTTATTATGGTCTGACCCCGATGACCGATGTGGTTGGGGCATCTCTC 765 |||| ||||||||||||||||||||||| || |||||| ||||||| ||||| ||||||| Sbjct 784 GGCCTATGTGTGACTTATTATGGTCTGATCCTGATGACAGATGTGGCTGGGGAATCTCTC 843 Query 766 CTCGAGGTGCCGGATATACGTTTGGTCAGGATATATCCGAACAATTCAATCACACAAACA 825 |||| ||||| |||||||| |||||||||||||| || ||||||||||||||||| |||| Sbjct 844 CTCGTGGTGCTGGATATACATTTGGTCAGGATATTTCGGAACAATTCAATCACACTAACA 903 Query 826 ACTTAAAGCTGATCGCCCGAGCTCACCAGTTGGTTATGGATGGATACAACTGGGCTCACG 885 |||||||||||||||||||||| || ||| | ||||||||||||| ||| ||||| |||| Sbjct 904 ACTTAAAGCTGATCGCCCGAGCGCATCAGCTCGTTATGGATGGATTCAATTGGGCACACG 963 Query 886 AGCAAAAAGTGGTTACTATTTTCAGTGCACCAAACTATTGTTATCGTTGTGGGAACATGG 945 ||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||| Sbjct 964 AGCAAAAAGTGGTTACTATATTCAGTGCACCAAACTATTGCTATCGCTGTGGAAACATGG 1023 Query 946 CCTCGATTCTTGAGGTCGACGACTGCAGGAACCACACCTTCATTCAGTTTGAACCAGCAC 1005 |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 1024 CCTCAATTCTTGAGGTCGATGACTGCAGGAACCACACGTTCATTCAGTTTGAACCAGCAC 1083 Query 1006 CGAGGAGAGGAGAACCAGATGTCACCCGAAGGACTCCAGACTATTTTCTGTGA 1058 ||||||||||||| |||||||| ||||||||||| || |||||||| || ||| Sbjct 1084 CGAGGAGAGGAGAGCCAGATGTAACCCGAAGGACACCTGACTATTTCCTTTGA 1136 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53915385330 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5