BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935148
Length=2125
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42620.1 | Symbols: MAX2, ORE9, PPS | RNI-like superfamily p... 3291 0.0
> AT2G42620.1 | Symbols: MAX2, ORE9, PPS | RNI-like superfamily
protein | chr2:17756140-17758468 FORWARD LENGTH=2329
Length=2329
Score = 3291 bits (1782), Expect = 0.0
Identities = 2017/2131 (95%), Gaps = 14/2131 (1%)
Strand=Plus/Plus
Query 1 TTGTAGATTTGCCGCTTCTCATGGCTTCTTCCACCACTACTCTCTCCGACCTCCCTGACG 60
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 11 TTGTAGATTTGCCGCTTCTCATGG---CTT---CCACTACTCTCTCCGACCTCCCTGACG 64
Query 61 TCATCTTATCCACCATTTtctctctcgtctccgattctcgagctcgcaactctctctccc 120
|||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 65 TCATCTTATCCACCATTTCCTCTCTCGTATCCGATTCCCGAGCTCGCAACTCTCTCTCCC 124
Query 121 tcgtctcccacaaattcctcgccctcgaaagatccactcgctctctcctcACCCTCCGTG 180
||||||| |||||||||||||| |||||| ||||||||||||||| |||||| ||||||
Sbjct 125 TCGTCTCTCACAAATTCCTCGCTCTCGAACGATCCACTCGCTCTCACCTCACTATCCGTG 184
Query 181 GCAACGCTCGTGatctctctctcgtccccggctgtttccgatcaatctcacatctcgatc 240
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 185 GCAACGCTCGTGATCTCTCCCTCGTCCCCGACTGTTTCCGATCAATCTCACATCTCGATC 244
Query 241 tctctttcctctctccatggggtcacactcttctcgcttctctcCCTATCGATCACCAGA 300
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 245 TCTCTTTCCTCTCCCCATGGGGTCACACTCTTCTCGCTTCTCTCCCAATCGATCACCAGA 304
Query 301 ACCTTCTCGCTCTCCGTCTCAAAATCTGTTTCCCTTCCGTCGTCTCTCTCAACGTCTACT 360
||||||||||||||||||||||| |||||||||||| ||||| ||||| |||||||||
Sbjct 305 ACCTTCTCGCTCTCCGTCTCAAATTCTGTTTCCCTTTCGTCGAGTCTCTAAACGTCTACA 364
Query 361 CTCGATCTCCGAGCTCTCTCGAGCTTTTACTTCCTCAATGGCCGAGAATTCGTCACATCA 420
| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 365 CACGATCTCCGAGCTCTCTCGAGCTTCTACTTCCTCAATGGCCGAGAATTCGCCACATCA 424
Query 421 AGCTCCTCCGATGGCATCAACGAGCTTCTCAGATCCCTATAGGTGGTGATTTTGCTCCTA 480
||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 425 AGCTCCTCCGATGGCATCAACGAGCTTCTCAGATCCCTACCGGTGGCGATTTTGTTCCTA 484
Query 481 TTTTTGAACACTGTGGTGGTTTCCTTGAGTCTTTAGATCTCTCTGCCTTCTATCACTGGA 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 485 TTTTTGAACACTGTGGTGGTTTCCTTGAGTCTTTAGATCTCTCCAACTTCTATCACTGGA 544
Query 541 CTGAAGATTTACCTCCGGTTCTTCTCCGGTATGCTGACGTGGCGGCGAGGCTTACACGGT 600
||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 545 CTGAAGACTTACCTCCTGTGCTTCTCCGCTATGCTGACGTGGCGGCGAGGCTTACACGGT 604
Query 601 TGGATCTCTTGACGGCGTCTTTCACCGAAGGATACAAATCAAGCGAAATCGTCAGTATCA 660
| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 605 TAGATCTCTTGACGGCGTCGTTCACCGAGGGATACAAATCAAGCGAAATCGTTAGTATCA 664
Query 661 CTAAATCTTGCCCTAATTTGAAGGA-TTTTCGTGTAGCTTGTACGTTTGATCCGAGATAC 719
| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 665 CCAAATCTTGCCCTAATTTGAA-GACTTTTCGTGTAGCTTGTACGTTTGATCCGAGATAC 723
Query 720 TTTGAATTCGTCGGAGATGAGACTCTCTCCGCTGTAGCTACCAATTGCCCTAAGTTAACG 779
||||||||||||||||| |||||||||||||| |||||||||| || |||||||||||||
Sbjct 724 TTTGAATTCGTCGGAGACGAGACTCTCTCCGCCGTAGCTACCAGTTCCCCTAAGTTAACG 783
Query 780 CCTCTCCATATGGTAGACACAGCTTCGTTGGCGAATCCTAGAGCAATTCCAGGTATGGAA 839
| ||| || ||||| ||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 784 CTTCTACACATGGTGGACACAGCTTCGTTGGCGAATCCTAGAGCTATTCCAGGTACGGAA 843
Query 840 GCTGGAGATTCAGCGGTCACGGCAGGGACGCTAATTGAGGTTTTCTCAGGTTTACCGAAT 899
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 844 GCTGGAGATTCAGCTGTCACGGCGGGGACGCTAATTGAAGTTTTCTCAGGTTTACCGAAT 903
Query 900 CTAGAGGAGCTGGTTCTTGATGTAGGGAAGGATGTGAAGCATAGTGGTGTAGCTTTAGAG 959
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 904 CTAGAGGAGCTGGTTCTTGACGTAGGAAAGGATGTGAAGCATAGTGGTGTAGCTTTAGAG 963
Query 960 GCATTGAATTCTAAATGCAAGAAGCTACGAGCCTTGAAGCTAGGACAGTTCCAAGGTGTT 1019
|||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct 964 GCATTGAATTCTAAATGCAAGAAGTTAAGAGTATTGAAGCTAGGACAGTTCCAAGGTGTT 1023
Query 1020 TGCTCTGCTACAGAGTGGAGGAGGTTCGACGGCGTGGCTTTATGTGGAGGACTGCAGTCG 1079
|||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||
Sbjct 1024 TGCTCTGCTACAGAATGGAGGAGGCTCGACGGTGTGGCTTTATGTGGAGGATTGCAGTCG 1083
Query 1080 TTGTCGATTAAGAATTCCGGCGATTTGACTGATATGGGTTTGGTGGCTATAGGGAGAGGA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 TTGTCGATTAAGAATTCCGGCGATTTGACTGATATGGGTTTGGTGGCTATAGGGAGAGGA 1143
Query 1140 TGTTGTAAGTTGACTAAGTTTGAGATTCAAGGGTGTGAGAATGTAACAGTGAATGGACTA 1199
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1144 TGTTGTAAGTTGACTACGTTTGAGATTCAAGGGTGTGAGAATGTAACAGTGGATGGACTA 1203
Query 1200 AGAACAATGGTTAGTCTTCGGAGAAAAACTTTGACTGATGTGAGAATCTCTTGCTGCAAG 1259
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1204 AGAACAATGGTTAGTCTTCGGAGTAAGACTTTGACTGATGTGAGAATCTCTTGCTGCAAG 1263
Query 1260 AATCTTGATGCAACCGCTTCTTTAAAGGCGGTTGAGCCGATTTGTGATCGGATCAAGAAA 1319
|||||||| || | |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1264 AATCTTGACACAGCTGCTTCTTTAAAGGCAATTGAGCCGATTTGTGATCGGATCAAGAGA 1323
Query 1320 CTGCATATAGACTGTGTGTGGTCTGGTTCAGA-G--GAGGAGGTAGAAGAAAGAGTGGAA 1376
|||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 1324 CTGCATATAGACTGTGTGTGGTCTGGTTCAGAGGACGAGGAGGTAGAAGGAAGAGTGGAA 1383
Query 1377 ACTAGCGAGACTAACCAC-AAGGATGATGATGATGATTGCGAGAGGAGTCTGAAGAGGTG 1435
||||| ||| || ||||| || || || ||||||| || ||||||||| | |||||||||
Sbjct 1384 ACTAGTGAGGCTGACCACGAA-GAGGAGGATGATGGTTACGAGAGGAGCCAGAAGAGGTG 1442
Query 1436 CAAGTATTCATTGGAGGAAGAACACTGCTCAACTAGTGATGGGAATGGATTCTGTTCTGA 1495
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1443 CAAGTATTCATTCGAGGAAGAACACTGCTCAACTAGTGATGTGAATGGATTCTGTTCTGA 1502
Query 1496 AGACAGAGTATGGGAGAAACTGGAGTATCTGTCTTTATGGATCAGTGTTGGAGAATTTCT 1555
||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
Sbjct 1503 AGATAGAGTATGGGAGAAACTGGAGTATCTATCTTTATGGATCAATGTTGGAGAATTTTT 1562
Query 1556 GACGCCATTACCTATGACAGGACTAGATGACTGTCCAAATTTGGAAGAGATTAGGATCAA 1615
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1563 GACGCCATTACCTATGACAGGACTAGATGACTGTCCGAATTTGGAAGAGATTAGGATCAA 1622
Query 1616 GATAGAAGGAGATTGCAGAGGTAAACGCAGGCCAGCCGAGCCAGAGTTCGGGTTAAGCTG 1675
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1623 GATAGAAGGAGATTGCAGAGGTAAACGCAGGCCAGCCGAGCCAGAGTTTGGGTTAAGTTG 1682
Query 1676 TCTCGCTCTCTACCCAAAGCTCTCAAAGATGCAGTTAGATTGCGGGGACACAATCGGCTT 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1683 TCTCGCTCTCTACCCAAAGCTCTCAAAGATGCAGTTAGATTGCGGGGACACAATCGGTTT 1742
Query 1736 CGCACTGACCGCACCTCCAATGCAGATGGATTTGAGTTTATGGGAAAGATTCTTCTTGAC 1795
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 CGCACTGACCGCACCGCCAATGCAGATGGATTTGAGTTTATGGGAAAGATTCTTCTTGAC 1802
Query 1796 CGGAATTGGAAGCTTGAGCTTGAGCGAGCTTGATTATTGGCCACCACAGGATAGAGACGT 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1803 CGGAATTGGAAGCTTGAGCTTGAGCGAGCTTGATTATTGGCCACCACAGGATAGAGATGT 1862
Query 1856 TAACCAGAGGAGTCTCTCGCTTCCTGGAGCAGGTCTGTTACAAGAGTGCCTGACTCTGAG 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1863 TAACCAGAGGAGTCTCTCGCTTCCTGGAGCAGGTCTGTTACAAGAGTGCCTGACTTTGAG 1922
Query 1916 GAAGCTCTTCATCCATGGAACAGCTCATGAGCATTTCATGAACTTTTTGTTGAGAATCCC 1975
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 GAAGCTGTTCATCCATGGAACAGCTCATGAGCATTTCATGAACTTTTTGTTGAGAATCCC 1982
Query 1976 CAACTTAAGGGATGTACAGCTAAGAGCAGATTATTATCCGGCGCCGGAGAACGATATGAG 2035
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1983 AAACTTAAGGGATGTACAGCTTAGAGCAGACTATTATCCGGCGCCGGAGAACGATATGAG 2042
Query 2036 CACAGAGATGAGAGTTGGTTCCTGTAGCCGATTCGAGGACCAATTGAACAGCCGCAACAT 2095
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2043 CACAGAGATGAGAGTTGGTTCGTGTAGCCGATTCGAGGACCAATTGAACAGCCGCAACAT 2102
Query 2096 CATTGACTGAAACTT-AAGAGTGAGTTACCT 2125
||||||||||||||| |||||||||||||||
Sbjct 2103 CATTGACTGAAACTTGAAGAGTGAGTTACCT 2133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105370943955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5