BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935260

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43550.1 | Symbols:  | Scorpion toxin-like knottin superfami...   449    6e-126


> AT2G43550.1 | Symbols:  | Scorpion toxin-like knottin superfamily 
protein | chr2:18073234-18073905 FORWARD LENGTH=595
Length=595

 Score =  449 bits (243),  Expect = 6e-126
 Identities = 293/317 (92%), Gaps = 4/317 (1%)
 Strand=Plus/Plus

Query  32   CAATGTCCG-ATACATCTCCAAAGTGGGCAATAAGCAAAGGAAAATGAAGTCTATTTCCA  90
            ||||||||| |||||||||||||||  |||||||||||||||||||||||| | ||||| 
Sbjct  28   CAATGTCCGAATACATCTCCAAAGTAAGCAATAAGCAAAGGAAAATGAAGTTTGTTTCCG  87

Query  91   TCTTCCTTGTGCTGTTTCTCTTCTTCCTCGTCGTTCTTGAGGCGCCGGAGAAGATAGAAG  150
            ||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct  88   TCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGAGGCCCCGGAGAAGATAGAAG  147

Query  151  -CAAA-A-GACAAGTTCATATGTGTGGTTGAGTACGGCGGAGACGTGGGTCCCACGTTCT  207
             |||| | |||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct  148  CCAAAGACGACAAGTTCATATGTGTGGTTGAGTATGGAGGAGACGTGGGTCCAACGTTCT  207

Query  208  GTAACCCTAAGTTCTTCCCCACGTTGTGCCGTCAAAACTGCCGGAGCTTCAAAGGTGCAA  267
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  208  GTAACCCTAAATTCTTCCCCACGTTGTGCCGTCAAAACTGCCGGAGCTTCAAAGGTGCCA  267

Query  268  AAGGCGGTATATGCGTGAAGCAACCGAAACACAAACCTATCAAATGCTTCTGCGACTACT  327
            ||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||
Sbjct  268  AAGGCGGTAAATGCGTGAAGCAACCCAAACACAAACATATCAAGTGCTTCTGCGACTACT  327

Query  328  GCAAAGATGACTAGACT  344
            | ||||| |||||||||
Sbjct  328  GTAAAGACGACTAGACT  344



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16940231413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5