BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935279 Length=2092 Score E Sequences producing significant alignments: (Bits) Value AT2G43680.1 | Symbols: IQD14 | IQ-domain 14 | chr2:18108349-181... 2115 0.0 > AT2G43680.1 | Symbols: IQD14 | IQ-domain 14 | chr2:18108349-18111831 FORWARD LENGTH=2505 Length=2505 Score = 2115 bits (1145), Expect = 0.0 Identities = 1330/1417 (94%), Gaps = 22/1417 (2%) Strand=Plus/Plus Query 678 TCTCCAAGAGCTG-CTTCTCCAAGGGCAGAGCCACCAACATTGGACACTCCAAGACCTCC 736 ||| ||| ||| | |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 885 TCTTCAA-AGCCGCCTTCTCCAAGAGCAGAGCCACCAACATTGGACACTCCAAGACCTCC 943 Query 737 TTCCCCAAAAACTGCCTCTCCAAGGGCAGACCCACCAAGATTCGATGCTCCAAGACCCAC 796 || |||| | |||| |||| ||| ||||||||||||||||| |||||| || ||||||| Sbjct 944 CTCTCCAAGAGCTGCTTCTCTAAGAGCAGACCCACCAAGATTGGATGCTGCACGACCCAC 1003 Query 797 CACGCCTAAGCCTCCTTCTCCAAGAGCAGACACACCAAGATTGGATGCTCCAAGACCTAC 856 |||||||| ||||||||||||| ||||||| |||||||||||||||||||| |||| || Sbjct 1004 CACGCCTAGGCCTCCTTCTCCACTAGCAGACGCACCAAGATTGGATGCTCCACGACCCAC 1063 Query 857 CACGCCTAAGCCTCCTTCTCCAAGAGCAGACGCACCAAGATTGGATGCTCCAAGACCCAC 916 ||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||| Sbjct 1064 TACGCCTAAGCCGCCTTCTCCAAGATCAGACCCGCCAAGATTGGATGCTCCAAGACCCAC 1123 Query 917 TACGCCTAAGCCCCCTTCTCCAAGAGCGGTTTCGCCTAGGGGTGTGCAGCGACGAGAGGT 976 ||||||||||||||||||||||||| ||||||| ||||||| ||||||||| || ||| | Sbjct 1124 TACGCCTAAGCCCCCTTCTCCAAGATCGGTTTCTCCTAGGGCTGTGCAGCGGCGGGAGAT 1183 Query 977 TGTTTATAGACCAGAGCCAACGCTTCCGGTCCAACATGCTTCTGCAACAAAGATTCAAGG 1036 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1184 TGTTTATAGACCAGAGCCAACGCTTCCGGTCCAACATGCTTCTGCAACAAAGATTCAAGG 1243 Query 1037 AGCTTTCAGAGGTTACATGGCAAGGAAGAGTTTCAGAGCTCTCAAAGGTCTAGTCAGACT 1096 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1244 AGCTTTCAGAGGTTACATGGCAAGGAAGAGTTTCAGAGCTCTCAAAGGTCTAGTCAGACT 1303 Query 1097 TCAAGGTGTGGTGAGAGGATACAGTGTGAAGCGGCAGACGATAAATGCAATGAAGTACAT 1156 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1304 TCAAGGTGTGGTGAGAGGATACAGCGTGAAGCGGCAGACGATAAATGCAATGAAGTACAT 1363 Query 1157 GCAGCAAGTGGTCCGTGTTCAATCCCAAATCCAGTCACGTCGCATCAAAATGTTGGAAAA 1216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1364 GCAGCAAGTGGTCCGTGTTCAATCCCAAATCCAGTCACGTCGCATCAAAATGTTGGAAAA 1423 Query 1217 CCAAGCTCAGGTGGAGAAAGATGAAGCCAAATGGGGTGCATCTGAAGCTGGTAACGATAA 1276 |||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| ||||| Sbjct 1424 CCAAGCCCAGGTAGAGAAAGATGAAGCCAAATGGGCTGCGTCTGAAGCTGGTAATGATAA 1483 Query 1277 TTGGGATGACAGTGTGCTGACAAAAGAAGAAAGGGATGCAAGATCACAGAGAAAGACTGA 1336 ||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| Sbjct 1484 TTGGGATGACAGTGTGCTGACAAAAGAGGAAAGGGATTCAAGATCACAAAGAAAGACTGA 1543 Query 1337 CGCGATCATCAAGAGAGAAAGATCCATGGCTTATGCATATTCTCGCAAGCTGTGGAAGAA 1396 ||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 1544 CGCAATCATCAAGAGAGAAAGATCCATGGCCTATGCATATTCTCGCAAGTTGTGGAAGAA 1603 Query 1397 CAGTCCCAAGTCTACTCAGGACAATCGTTCTTCAGGTGGGTTCCCTCAATGGTGGAACTG 1456 |||||| ||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 1604 CAGTCCTAAGTCTACTCAGGACAATCGTTCTT----T-----CCCTCAATGGTGGAACTG 1654 Query 1457 GGCGGACCGGCAGCATCCTCTTGCTAGTCCTGCACCGAGCTATAGCCAACCACAGAGAGA 1516 || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1655 GGTGGACCGGCAGAATCCTCTTGCTAGTCCTGCACCGAGCTATAGCCAACCACAAAGAGA 1714 Query 1517 CTTCAGGCTAACACCATCAAGACTGTGCCCAAGTCCGCTGTCTCAGTCAAGCAAACAACA 1576 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1715 TTTCAGGCTAACACCATCAAGACTGTGCCCAAGTCCTCTGTCTCAGTCAAGCAAACAACA 1774 Query 1577 CCATATCAGGCTTGACAACCACTTTGACACTTCCACACCCAGATCGTCGAGATCTACTTT 1636 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct 1775 CCATATCAGGCTTGACAACCACTTTGACACTTCAACACCCAGATCGTCAAGATCCACTTT 1834 Query 1637 TCACACTCCATCCAGACCCATCCACACAGGGACATCAAGATACTCGAGAGGAAGACTAAG 1696 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1835 TCACACTCCCTCCAGACCCATCCACACAGGGACATCAAGATACTCAAGAGGAAGACTAAG 1894 Query 1697 AGGTCAAGATTCTCCTTTCAAGGATGATGACAGCCTCACAAGCTGCCCTCCATTCCCGAG 1756 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 1895 AGGTCAAGATTCTCCTTTCAAGGATGATGATAGCCTCACAAGCTGCCCTCCATTCCCTAG 1954 Query 1757 CTACATGGCTCCAACAGTCTCTGC-AAAGGCAAAAGTTAGACCAAACAGCAATCCAAAGG 1815 |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 1955 CTACATGGCTCCAACAGTCTCTGCCAAAG-CAAAAGTTAGACCAAACAGCAATCCAAAGG 2013 Query 1816 AGAGAGTGATGGGTACACCGGTAAGCGAGAAGAGGAGAATGTCGTTTCCTCCCATGCAAC 1875 ||||||||||||||||||| || |||||||||||||||||||||| ||| |||| |||| Sbjct 2014 AGAGAGTGATGGGTACACCAGTCAGCGAGAAGAGGAGAATGTCGTATCCCCCCACGCAA- 2072 Query 1876 AAGGTCTTGATACGTTTAGATGGAACAAAGGGTCATTGCTCATGAGCAACAGCAGCAGCC 1935 | ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2073 --G------ATACGTTTAGATGGAACAAAGGGTCATTGGTCATGAGCAACAGCAGCAGCC 2124 Query 1936 ACAGAGGTCCTGGGTCACCTGGAGGTGTGGTTCTTGAGAAGCACAAGACACTTAAGTCAG 1995 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2125 ACAGAGGTCCTGGTTCACCTGGAGGTGTGGTTCTTGAGAAGCACAAGACACTTAAATCAG 2184 Query 1996 TAGGAAATTTGAGTATTGGTTCCACTGCCTCGATGGCAACAACAGTTGGGAGAAAGGAAT 2055 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2185 TAGGAAATTTGAGCATTGGTTCCACTGCCTCCATGGCAACAACAGTTGGGAGAAAGGAAT 2244 Query 2056 TTAACAGATTTGTGTGATTTCTTTTGATTTGAACATT 2092 ||||||||||||||||||||||||||||||||||||| Sbjct 2245 TTAACAGATTTGTGTGATTTCTTTTGATTTGAACATT 2281 Score = 1014 bits (549), Expect = 0.0 Identities = 810/927 (87%), Gaps = 53/927 (6%) Strand=Plus/Plus Query 1 GTAAGGAAAGTAATGTTGG-AATAATGGTGAAGAAAGGAAGTTGGTTTTCTGCTATCAAA 59 ||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 229 GTAAGGAAAGTGATGTTGGCAA-AATGGTGAAGAAAGGAAGTTGGTTTTCTGCTATCAAA 287 Query 60 AGGGTTTTTACTCCACATTCCAAAGAGAAGCTAGCCAATCAGGAACCAGAGAGAAAGAGT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 288 AGGGTTTTTACTCCACATTCCAAAGAGAAGCTAGCCAATCAGGAACCAGAGAGAAAGAGT 347 Query 120 GTAAAAGAAAAGAGGAAGAAGGGGTTTGGGAAGCTAAGGCATGGAGAGACCAATTCATTT 179 | |||||||||| |||||| || |||||||||||||||||||| ||||||||||||||| Sbjct 348 GGCAAAGAAAAGAAGAAGAAAGGTTTTGGGAAGCTAAGGCATGGCGAGACCAATTCATTT 407 Query 180 CTTCCCATCTTCAGAGAGCCTAGTAGTATCGAAAAGATCTTGGGCGAGGCTGAGAGAGAT 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 408 CTTCCCATCTTCAGAGAGCCTAGTAGTATCGAAAAGATCTTGGGCGAGGCTGAGAGAGAT 467 Query 240 CACAATCTTGTTTTCAGGCCTCCTACTCCTGATCGATCAAATCCATTTTCAGcctctcct 299 ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 468 CACAATCTTGTCTTCAGGCCTCCTACTCCTGATCGACCAAATCCATATTCAGCCTCTCCT 527 Query 300 cct------cct-c--ctccAAGGCCTGCTTCTCCTCGGGTTC--CTTC-CCCA-A---G 343 ||| ||| | |||| || |||||| || | | | |||| || | | | Sbjct 528 CCTCCGAGGCCTGCTTCTCCTCGGGTTGCTTC-CC-CAAGACCAACTTCTCCAAGAGTTG 585 Query 344 ----ACCA--A----CTTCTCCAAGAGTTG-CCTCACCACGAGCCGC-TTCTCCAAAGCC 391 |||| | |||||||||||| || | ||| || || | ||| |||||||| Sbjct 586 CCTCACCACGAGTCCCTTCTCCAAGAGCTGAAGT-TCCAAGAACC-CTTTCACCAAAGCC 643 Query 392 TCCTTCTCCAAGAGCTGAAGTTCCAAGATCCCTTTCGCCAAAGCCTCCTTCTCCAAGAGC 451 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 644 TCCTTCTCCAAGAGCTGAAGTTCCAAGATCCCTTTCACCAAAGCCTCCTTCTCCAAGAGC 703 Query 452 TGACCTTCCAAGATCACTTTCGCCAAA-------G--C---CGAAGCCATCATCAGCCTC 499 ||||||||||||||||||||||||||| | | ||||||||||||||||||| Sbjct 704 TGACCTTCCAAGATCACTTTCGCCAAAGCCCTTTGATCGATCGAAGCCATCATCAGCCTC 763 Query 500 TGCCAATG---CTCCTCCTCTTAGGCCTGCTTCTACTCGAGTTCCTTCTCAGAGAATTAC 556 ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 764 TGCTAATGCCCCTCCTACTCTTAGGCCTGCTTCTACTCGAGTTCCTTCTCAGAGAATTAC 823 Query 557 CCCTCCCAGTGTTCCTTCTCCAAGACCAAGTTCACCAAGAGGTGCATCCCCACAAGCCGT 616 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 824 ACCTCACAGTGTTCCTTCTCCAAGACCAAGTTCACCAAGAGGTGCCTCCCCACAAGCCAT 883 Query 617 CTCTTCAAAGCCGCCTTCTCCAAGAGCTGAGCCACCAACATTGGACACTCCAAGACCTCC 676 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 884 CTCTTCAAAGCCGCCTTCTCCAAGAGCAGAGCCACCAACATTGGACACTCCAAGACCTCC 943 Query 677 TTCTCCAAGAGCTGCTTCTCCAAGGGCAGAGCCACCAACATTGGACACTCCAAGACCT-C 735 ||||||||||||||||||| ||| ||||| ||||||| |||||| || || |||| | Sbjct 944 CTCTCCAAGAGCTGCTTCTCTAAGAGCAGACCCACCAAGATTGGATGCTGCACGACCCAC 1003 Query 736 CTTCCCCAAAAACTGCCT-CTCCAAGGGCAGACCCACCAAGATTCGATGCTCCAAGACCC 794 | | || | || ||| ||||| |||||| |||||||||| ||||||||| ||||| Sbjct 1004 CA-CGCCTAGGCCT-CCTTCTCCACTAGCAGACGCACCAAGATTGGATGCTCCACGACCC 1061 Query 795 ACCACGCCTAAGCCTCCTTCTCCAAGAGCAGACACACCAAGATTGGATGCTCCAAGACCT 854 || ||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||| Sbjct 1062 ACTACGCCTAAGCCGCCTTCTCCAAGATCAGACCCGCCAAGATTGGATGCTCCAAGACCC 1121 Query 855 ACCACGCCTAAGCCTCCTTCTCCAAGA 881 || ||||||||||| |||||||||||| Sbjct 1122 ACTACGCCTAAGCCCCCTTCTCCAAGA 1148 Score = 217 bits (117), Expect = 4e-55 Identities = 170/195 (87%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 750 GCC-TCTCCAAGGGCAGACCCACCAAGATTCGATGCTCCAAGACC-CACCACGCCTAAG- 806 ||| |||||||| ||||| ||||||| ||| || |||||||||| | || | || ||| Sbjct 896 GCCTTCTCCAAGAGCAGAGCCACCAACATTGGACACTCCAAGACCTC-CCTCTCC-AAGA 953 Query 807 CCTCCTTCTCCAAGAGCAGACACACCAAGATTGGATGCTCCAAGACCTACCACGCCTAAG 866 || |||||| |||||||||| ||||||||||||||||| || |||| |||||||||| | Sbjct 954 GCTGCTTCTCTAAGAGCAGACCCACCAAGATTGGATGCTGCACGACCCACCACGCCTAGG 1013 Query 867 CCTCCTTCTCCAAGAGCAGACGCACCAAGATTGGATGCTCCAAGACCCACTACGCCTAAG 926 |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1014 CCTCCTTCTCCACTAGCAGACGCACCAAGATTGGATGCTCCACGACCCACTACGCCTAAG 1073 Query 927 CCCCCTTCTCCAAGA 941 || |||||||||||| Sbjct 1074 CCGCCTTCTCCAAGA 1088 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 103714325970 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5