BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935283
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43710.2 | Symbols: SSI2, FAB2 | Plant stearoyl-acyl-carrier... 2082 0.0
> AT2G43710.2 | Symbols: SSI2, FAB2 | Plant stearoyl-acyl-carrier-protein
desaturase family protein | chr2:18119962-18122889
FORWARD LENGTH=1745
Length=1745
Score = 2082 bits (1127), Expect = 0.0
Identities = 1205/1243 (97%), Gaps = 3/1243 (0%)
Strand=Plus/Plus
Query 3 ATTCATTCATATCCAGAAATGGCTCTAAAGCTTAACCCTTTGGTGGCATCTCAGCCCTAC 62
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 129 ATTCA-TCATATCCAGAAATGGCTCTAAAGTTTAACCCTTTGGTGGCATCTCAGCCTTAC 187
Query 63 AAATTCCCTTCCTCGACTCGTCCGCCAACTTCTTCTTTCAGATCTCCCAAGTTCCTCTGC 122
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 188 AAATTCCCTTCCTCGACTCGTCCGCCAACTCCTTCTTTCAGATCTCCCAAGTTCCTCTGC 247
Query 123 CTCGCTTCATCTTCTCCTGCTCTCAGCTCCGGCGCCAAG-GAGGTTGAGAGCTTGAAGAA 181
|||||||| |||||||| ||||||||||||||| ||||| | |||||||| ||||||||
Sbjct 248 CTCGCTTCTTCTTCTCCGGCTCTCAGCTCCGGCCCCAAGTCA-GTTGAGAGTTTGAAGAA 306
Query 182 GCCATTTACACCACCTAGGGAGGTGCATGTTCAAGTCTTGCACTCCATGCCACCTCAAAA 241
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 307 ACCATTTACGCCACCCAGGGAAGTGCATGTTCAAGTCTTGCACTCCATGCCACCTCAAAA 366
Query 242 GATCGAGATCTTCAAATCTATGGAAAACTGGGCCGAGGAGAACCTTCTGATTCACCTCAA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GATCGAGATCTTCAAATCTATGGAAAACTGGGCCGAGGAGAACCTTCTGATTCACCTCAA 426
Query 302 GGATGTGGAGAAGTCTTGGCAACCCCAGGATTTCTTGCCTGACCCTGCATCAGATGGGTT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GGATGTGGAGAAGTCTTGGCAACCCCAGGATTTCTTGCCTGACCCTGCATCAGATGGGTT 486
Query 362 TGAAGATCAGGTAagagagttaagagagagggcgagagagCTCCCCGATGATTACTTTGT 421
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 487 TGAAGATCAGGTAAGAGAGTTAAGAGAGAGGGCTAGAGAGCTCCCTGATGATTACTTTGT 546
Query 422 TGTTTTGGTGGGGGACATGATCACAGAAGAAGCACTTCCGACCTATCAAACTATGTTGAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TGTTTTGGTGGGGGACATGATCACAGAAGAAGCACTTCCGACCTATCAAACTATGTTGAA 606
Query 482 CACTTTGGATGGAGTTAGGGATGAAACAGGTGCTAGTCCTACTTCATGGGCTATTTGGAC 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 CACTTTGGATGGAGTTAGGGATGAAACAGGTGCTAGTCCTACTTCATGGGCTATTTGGAC 666
Query 542 CAGAGCTTGGACTGCAGAAGAAAACCGACATGGCGATCTTCTGAATAAATACCTTTACTT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CAGAGCTTGGACTGCAGAAGAAAACCGACATGGCGATCTTCTGAATAAATACCTTTACTT 726
Query 602 GTCTGGTCGGGTGGACATGAGGCAGATCGAAAAGACCATTCAGTACTTGATTGGATCCGG 661
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 727 GTCTGGTCGTGTTGACATGAGGCAGATCGAAAAGACCATTCAGTACTTGATTGGATCTGG 786
Query 662 AATGGATCCGCGGACAGAGAATAATCCCTACCTTGGCTTCATCTATACTTCATTCCAAGA 721
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 787 AATGGATCCGCGGACAGAGAATAACCCCTACCTTGGCTTCATCTATACGTCATTCCAAGA 846
Query 722 AAGAGCGACCTTCATCTCTCATGGAAACACAGCCCGCCAAGCCAAAGAGCATGGGGATAT 781
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 847 AAGAGCGACATTCATCTCTCACGGAAACACAGCCCGCCAAGCCAAAGAGCACGGGGACAT 906
Query 782 GAAATTAGCCCAAATATGTGGGACAATAGCTGCAGACGAGAAGCGTCACGAAACTGCTTA 841
||| |||||||||||||||| |||||||||||||||||||||||||| ||||| || ||
Sbjct 907 CAAACTAGCCCAAATATGTGGCACAATAGCTGCAGACGAGAAGCGTCATGAAACAGCATA 966
Query 842 CACCAAGATAGTTGAAAAGCTCTTTGAGATTGATCCTGATGGTACTGTCATGGCTTTTGC 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 CACCAAGATAGTTGAAAAGCTCTTTGAGATTGATCCTGATGGTACTGTCATGGCTTTTGC 1026
Query 902 AGACATGATGAGAAAGAAAATCTCAATGCCTGCTCACTTGATGTATGATGGGCGCAACGA 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 AGACATGATGAGAAAGAAAATCTCAATGCCTGCTCACTTGATGTATGATGGGCGCAACGA 1086
Query 962 CAACCTCTTTGACAACTTCTCTTCCGTGGCTCAGAGGCTCGGTGTTTACACCGCCAAAGA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 CAACCTCTTTGACAACTTCTCTTCCGTGGCTCAGAGGCTCGGTGTTTACACCGCCAAAGA 1146
Query 1022 CTATGCCGACATTCTTGAGTTTTTGGTTGGTAGGTGGAAAATTCAGGACTTAACCGGGCT 1081
|||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1147 CTATGCAGACATTCTTGAGTTTCTGGTTGGTAGGTGGAAAATCCAGGACTTAACCGGGCT 1206
Query 1082 TTCAGGTGAAGGAAACAAAGCACAAGACTACTTATGCGGGTTGTCTCCAAGAATCAAGAG 1141
|||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 1207 TTCAGGTGAAGGAAACAAAGCACAAGACTATTTATGCGGGTTGGCTCCAAGGATCAAGAG 1266
Query 1142 ATTGGATGAGAGAGCTCAAGCAAGAGCCAAGAAAGGACCCAAGATTCCTTTCAGTTGGAT 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 ATTGGATGAGAGAGCTCAAGCAAGAGCCAAGAAAGGACCCAAGATTCCTTTCAGTTGGAT 1326
Query 1202 ACACGACAGAGAAGTGCAGCTCTAAAAGGACAAAGACAAAAAC 1244
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 ACACGACAGAGAAGTGCAGCTCTAAAAGGACAAAGACAAAAAC 1369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61244664900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5