BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935303

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G31280.1 | Symbols: AGO2 | Argonaute family protein | chr1:1...   135    1e-31


> AT1G31280.1 | Symbols: AGO2 | Argonaute family protein | chr1:11181711-11185344 
FORWARD LENGTH=3343
Length=3343

 Score =  135 bits (73),  Expect = 1e-31
 Identities = 87/94 (93%), Gaps = 0/94 (0%)
 Strand=Plus/Minus

Query  49   TACGACCTCATGCGCCTCTACCAGCGACTCCTCCTACTGAACCGGCATAACTAACCGGAG  108
            ||||||| || |||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct  418  TACGACCCCACGCGCCTCTACCAGCGACTCCTCCTACTGAACCGGCATAACTCGCCGGAG  359

Query  109  CTTGCGACGGCTGCGGAACCACATGTGGTCGAGG  142
            | ||||||||||||||| |||| |||||||||||
Sbjct  358  CCTGCGACGGCTGCGGAGCCACCTGTGGTCGAGG  325



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9601140059


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5