BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935472 Length=864 Score E Sequences producing significant alignments: (Bits) Value AT2G45190.1 | Symbols: AFO, FIL, YAB1 | Plant-specific transcri... 1487 0.0 > AT2G45190.1 | Symbols: AFO, FIL, YAB1 | Plant-specific transcription factor YABBY family protein | chr2:18628265-18630712 REVERSE LENGTH=1035 Length=1035 Score = 1487 bits (805), Expect = 0.0 Identities = 840/857 (98%), Gaps = 1/857 (0%) Strand=Plus/Plus Query 1 CCCAACAATCAAGAAGATCAGATCATGGTGGGGTTTTTTATTTTCTCCTTATCAAGAATC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7 CCCAACAATCAAGAAGATCAGATCATGGTGGGGTTTTTTATTTTCTCCTTATCAAGAATC 66 Query 61 CTCTGATCAGTCAAATACCCATCAATCAATCAAATCCCCAAACACTCCC-AAAAAAGATC 119 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 67 CTCTGATCAGTCAAATACCCATCAATCAATCAAATCCCCAAACACTCCCAAAAAAAGATC 126 Query 120 AGGTTCCAAtttttttCCTCTTCTTACAAAAAAGATGTCTATGTCGTCTATGTCCTCCCC 179 || ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 127 AGCTTCCAATATTTTTCCCCTTCTTACAAAAAAGATGTCTATGTCGTCTATGTCCTCCCC 186 Query 180 TTCCTCAGCTGTTTGTTCACCGGACCACTTCTCTCCTTCCGAGCATCTCTGCTATGTCCA 239 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 187 TTCCTCAGCTGTTTGTTCACCGGACCACTTCTCTCCTTCCGACCATCTCTGCTATGTCCA 246 Query 240 ATGCAACTTTTGCCAAACCATTCTTGCGGTTAGTGTTCCTTACACAAGCTTGTTCAAGAC 299 ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 247 ATGCAACTTTTGCCAAACCATCCTTGCGGTTAATGTTCCTTACACAAGCTTGTTCAAGAC 306 Query 300 CGTAACTGTTCGATGTGGTTGCTGTACCAATCTCCTCTCGGTGAACATGAGATCATATGT 359 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 307 CGTAACTGTCCGATGTGGTTGCTGTACCAATCTCCTTTCGGTGAACATGAGATCATATGT 366 Query 360 CCTCCCAGCCTCTAACCAGCTCCAGCTCCAGCTCGGTCCTCACTCTTACTTCAACCCCCA 419 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 367 CCTCCCAGCTTCTAACCAGCTCCAGCTCCAGCTCGGTCCTCACTCTTACTTCAATCCCCA 426 Query 420 GGATATTCTGGAGGAGCTGAGAGATGCACCATCTAACATGAATATGATGATGATGAATCA 479 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 427 GGATATTCTGGAGGAGCTGAGAGATGCACCGTCTAACATGAATATGATGATGATGAATCA 486 Query 480 ACATCCTACTATGAATGACATACCATCTTTCATGGATCTTCATCAACAACATGAGATTCC 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 487 ACATCCTACTATGAATGACATACCATCTTTCATGGATCTTCATCAACAACATGAGATTCC 546 Query 540 TAAAGCACCACCCGTTAACCGCCCTCCAGAGAAAAGACAGAGAGTCCCATCCGCATATAA 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 547 TAAAGCACCACCCGTTAACCGCCCTCCAGAGAAAAGACAGAGAGTCCCATCCGCATATAA 606 Query 600 CCGATTCATCAAGGAGGAGATCCAACGTATCAAAGCTGGTAATCCTGATATAAGCCACAG 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 607 CCGATTCATCAAGGAGGAGATCCAACGTATCAAAGCTGGTAATCCTGATATAAGCCACAG 666 Query 660 AGAAGCCTTTAGTGCTGCTGCAAAGAATTGGGCCCACTTCCCCCACATACACTTCGGGCT 719 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 667 AGAAGCCTTTAGTGCTGCTGCCAAGAATTGGGCCCACTTCCCCCACATACACTTCGGGCT 726 Query 720 CGTGCCAGACAATCAACCCGTGAAGAAAACCAACATGCCCCAACAGGAGGGAGATGATAA 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 727 CGTGCCAGACAATCAACCCGTGAAGAAAACCAACATGCCCCAACAGGAGGGAGAGGATAA 786 Query 780 CATGGTGATGAAAGAAGGTTTCTACGCTCCTGCGGCTGCTAACGTTGGTGTGACTCCTTA 839 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 787 CATGGTGATGAAAGAAGGGTTCTACGCTCCTGCAGCTGCTAACGTTGGTGTGACTCCTTA 846 Query 840 TTAAAGAGatatatata 856 ||||||||||| ||||| Sbjct 847 TTAAAGAGATAAATATA 863 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42146449333 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5