BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935487 Length=1270 Score E Sequences producing significant alignments: (Bits) Value AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR) su... 1799 0.0 AT2G45880.1 | Symbols: BMY4, BAM7 | beta-amylase 7 | chr2:18878... 73.1 6e-12 > AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:18694816-18696657 REVERSE LENGTH=1842 Length=1842 Score = 1799 bits (974), Expect = 0.0 Identities = 1088/1144 (95%), Gaps = 4/1144 (0%) Strand=Plus/Plus Query 107 AGATGCAATTGCAGCATAGCGTCAAAACTGTTTGCTGAAATGCCTGAGAAGGACTTGATT 166 ||||| | ||| | ||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 702 AGATGGAGTTG-A-CATAGCGTCTAAACTGTTTGCTGATATGCCTGAGAAGGACTTGATT 759 Query 167 TCATGGAACTCAATGATCGATGGATATGTAAAACACGGAAGAATCGAGGATGCTAAGGGT 226 || |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 760 TCGTGGAACTCAATGATAGATGGATATGTAAAACACGGAAGAATCGAAGATGCTAAGGGT 819 Query 227 TTATTTGATGTGATGCCGAGAAGAGATGTGGTTACTTGTGCTACCATGATTGATGGGTAT 286 ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 820 TTATTCGATGTGATGCCGAGAAGAGATGTAGTTACTTGGGCTACCATGATTGATGGGTAT 879 Query 287 GCAAAGTTAGGTTTTGTTCATCAGGCTAAGACTCTGTTTGACCAAATGCCTCTTAGAGAT 346 ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 880 GCAAAGTTAGGTTTTGTTCATCACGCTAAGACTCTGTTTGACCAAATGCCTCATAGAGAT 939 Query 347 GTTGTGGCATATAATTCTATGATGGCTGGTTATGTTCAAAACAAGTGTCACATGGAAGCT 406 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 940 GTTGTGGCATATAATTCTATGATGGCTGGTTATGTTCAAAACAAGTATCACATGGAAGCT 999 Query 407 CTTGAAATATTTAACGACATGGAAAAGGAGAGTCACTTGTCACCCGATGAAACGACTTTG 466 ||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 1000 CTTGAAATATTTAGTGACATGGAAAAGGAGAGTCACTTGTTACCCGATGATACGACTTTG 1059 Query 467 GTAATCA-TTCTTTCTGCAATTGCTCAGCTTGGCCGATTATCGAAAGCCACCGATATGCA 525 ||||| | |||| |||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 1060 GTAAT-AGTTCTGCCTGCAATTGCTCAGCTTGGCCGATTATCCAAAGCCATAGATATGCA 1118 Query 526 TTTGTATATTGTGGAGAAACAATTCTATCTAGGTGGAAAACTCGGCGTTGCTCTCATTGA 585 |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1119 TTTGTACATCGTGGAGAAACAATTCTATCTAGGTGGAAAACTCGGTGTTGCTCTCATTGA 1178 Query 586 TATGTATTCGAAATGCGGAAGCATACAACACGCCATGTTGGTTTTCGAGGGAATCGAAAA 645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1179 TATGTATTCGAAATGCGGAAGCATACAACACGCCATGTTGGTTTTCGAGGGAATCGAAAA 1238 Query 646 CAAAAGCATTGATCACTGGAATGCTATGATTGGTGGGCTAGCTGTTCATGGTCTTGGAGA 705 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || || Sbjct 1239 CAAAAGCATTGATCACTGGAATGCTATGATTGGTGGGCTCGCTATTCATGGTCTAGGGGA 1298 Query 706 ATCCGCATTCAATATGCTCTTGCAGATCGAGAGACTCTCCATAATACCAGATGATATCAC 765 ||| |||||| |||||||||||||||| ||||||||||| ||| |||||| |||||||| Sbjct 1299 ATCTGCATTCGATATGCTCTTGCAGATTGAGAGACTCTCTTTAAAACCAGACGATATCAC 1358 Query 766 CTTTGTTGGAGTTTTAAATGCTTGTAGCCACTCTGGATTAGTGAAGGAAGGCCTTCTCTG 825 ||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 1359 CTTTGTTGGCGTTTTAAATGCTTGCAGCCACTCTGGGTTAGTAAAGGAAGGCCTTCTCTG 1418 Query 826 CTTTGAGCTCATGAGGAGAAAACACAAGATAGAACCAAGGTTGCAACACTATGGGTGTAT 885 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 1419 CTTTGAGCTCATGAGGAGAAAACACAAGATAGAACCAAGATTGCAACACTATGGTTGTAT 1478 Query 886 GGTCGACATACTATCGAGATCCGGTAGTATAGAGCTAGCCAAAAACTTAATAGAGGAAAT 945 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1479 GGTAGACATACTATCGAGATCCGGAAGTATAGAGCTAGCCAAAAACTTAATAGAGGAAAT 1538 Query 946 GCCAATTGAGCCAAATGATGTCATATGGAGAACATTTCTCACCGCTTGTAGTCACCACAA 1005 ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1539 GCCTGTTGAGCCAAATGATGTCATATGGAGAACGTTTCTCACCGCTTGTAGTCACCACAA 1598 Query 1006 GGAGTTTGAAACGGGAGAGCTTGTCGCGAAACACCTTATTTTGCAGGCTGGCTATAACCC 1065 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 1599 GGAGTTTGAAACGGGAGAGCTTGTCGCAAAACACCTTATTTTGCAGGCTGGATATAACCC 1658 Query 1066 GAGCTCATATGTGCTTCTCTCTAACATGTATGCTAGTTTTGGAATGTGGAAGGATGTTCG 1125 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1659 GAGCTCATATGTGCTACTCTCTAACATGTATGCTAGTTTTGGAATGTGGAAGGATGTTCG 1718 Query 1126 TAGAGTTAGAACGATGATGAAGGAAAGAAAGATAGAGAAAATTCCTGGATGTAGTTGGAT 1185 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1719 TAGAGTTAGAACGATGATGAAGGAAAGAAAGATAGAGAAAATTCCTGGTTGTAGTTGGAT 1778 Query 1186 TGAGCTCGATGGAAGAGTCCATGAGTTCTTTGTAGATAGCATTGAAGTTTCCAATACATT 1245 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1779 TGAGCTCGATGGAAGAGTCCATGAGTTCTTTGTAGATAGCATTGAAGTTTCCAGTACATT 1838 Query 1246 GTAG 1249 |||| Sbjct 1839 GTAG 1842 > AT2G45880.1 | Symbols: BMY4, BAM7 | beta-amylase 7 | chr2:18878518-18882578 REVERSE LENGTH=2855 Length=2855 Score = 73.1 bits (39), Expect = 6e-12 Identities = 41/42 (98%), Gaps = 0/42 (0%) Strand=Plus/Minus Query 83 AGTGGCACCATGCTTCTTAAGTGTAGATGCAATTGCAGCATA 124 |||||||||||||||||||||||||||||||||||||| ||| Sbjct 2342 AGTGGCACCATGCTTCTTAAGTGTAGATGCAATTGCAGAATA 2301 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62449477980 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5