BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935524
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45660.1 | Symbols: AGL20, SOC1, ATSOC1 | AGAMOUS-like 20 | ... 1157 0.0
> AT2G45660.1 | Symbols: AGL20, SOC1, ATSOC1 | AGAMOUS-like 20
| chr2:18807538-18811047 REVERSE LENGTH=1320
Length=1320
Score = 1157 bits (626), Expect = 0.0
Identities = 671/691 (97%), Gaps = 9/691 (1%)
Strand=Plus/Plus
Query 1 GAAATTAAAC-AAACAAGAAG--ATGGTGAGGGGCAAAACTCAGATGAAGAGAATAGAGA 57
|||||| ||| ||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 393 GAAATT-AACTAAAGAAGAAGATATGGTGAGGGGCAAAACTCAGATGAAGAGAATAGAGA 451
Query 58 ATGCAACAAGCAGACAAGTGACTTTCTCTAAACGAAGGAATGGTTTGTTGAAGAAAGCCT 117
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 452 ATGCAACAAGCAGACAAGTGACTTTCTCCAAAAGAAGGAATGGTTTGTTGAAGAAAGCCT 511
Query 118 TTGAGCTCTCAGTGCTTTGTGATGCTGAAGTTTCTCTTATCATCTTCTCTCCCAAAGGCA 177
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 512 TTGAGCTCTCAGTGCTTTGTGATGCTGAAGTTTCTCTTATCATCTTCTCTCCTAAAGGCA 571
Query 178 AACTTTATGAATTCGCCAGCTCCAATATGCAAGATACCATAGATCGTTATCTGAGGCATA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 AACTTTATGAATTCGCCAGCTCCAATATGCAAGATACCATAGATCGTTATCTGAGGCATA 631
Query 238 CTAAGGATCGAGTAAGCACCAAACCGGTTTCTGAAGAAAATATGCAGCATTTGAAATATG 297
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 CTAAGGATCGAGTCAGCACCAAACCGGTTTCTGAAGAAAATATGCAGCATTTGAAATATG 691
Query 298 AAGCAGCAAACATGATGAAGAAAATTGAACAACTCGAAGCTTCTAAACGTAAACTCTTGG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 AAGCAGCAAACATGATGAAGAAAATTGAACAACTCGAAGCTTCTAAACGTAAACTCTTGG 751
Query 358 GGGAAGGCATAGGAACATGCTCAATCGAGGAGCTGCAACATATTGAGCAACAGCTTGAGA 417
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 752 GAGAAGGCATAGGAACATGCTCAATCGAGGAGCTGCAACAGATTGAGCAACAGCTTGAGA 811
Query 418 AAAGTGTCAAATGTATCCGAGCAAGAAAGACTCAAGTGTTTAAGGAACAAATTGAGCAGC 477
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 AAAGTGTCAAATGTATTCGAGCAAGAAAGACTCAAGTGTTTAAGGAACAAATTGAGCAGC 871
Query 478 TCAAGCAAAAGGAGAAAGCTCTAGCTGCAGAAAACGAGAAGCTCTCTGAAAAGTGGGGAT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 TCAAGCAAAAGGAGAAAGCTCTAGCTGCAGAAAACGAGAAGCTCTCTGAAAAGTGGGGAT 931
Query 538 CTCATGAAATCGT-GATTTGGTCAAATAAGAATCAAGAAAGTACTGGAAGAGGTGATGAA 596
||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 CTCATGAAAGCGAAG-TTTGGTCAAATAAGAATCAAGAAAGTACTGGAAGAGGTGATGAA 990
Query 597 GAGAGTAGCCCAAGTTCTGAAGTAGAGACGCAATTGTTCATTGGGCTACCTTGTTCTTCA 656
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 991 GAGAGTAGCCCAAGTTCTGAAGTAGAGACGCAATTGTTCATTGGGTTACCTTGTTCTTCA 1050
Query 657 AGAAAGTGAT-TC-ACTCAACAAATAAAAAC 685
|||||||||| || |||||||||| ||||||
Sbjct 1051 AGAAAGTGATCTCCACTCAACAAA-AAAAAC 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33305239461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5