BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935618

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02280.1 | Symbols: TOC33, ATTOC33, PPI1 | translocon at the...   425    1e-118


> AT1G02280.1 | Symbols: TOC33, ATTOC33, PPI1 | translocon at the 
outer envelope membrane of chloroplasts 33 | chr1:448463-450425 
REVERSE LENGTH=1173
Length=1173

 Score =  425 bits (230),  Expect = 1e-118
 Identities = 280/301 (93%), Gaps = 15/301 (5%)
 Strand=Plus/Plus

Query  26   GCTGAAGGATTGAGACCAGTGATGGTTTCAAGAACAATGGGAGGGTTCACTATCAACATT  85
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  282  GCTGAAGGATTGAGACCAGTGATGGTTTCAAGAACAATGGGAGGGTTCACTATCAACATT  341

Query  86   ATTGACACCCCTGGACTTGTGGAAGCTGAATATGTCAATCACCAAGCCCTCGAGTTAATC  145
            |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct  342  ATTGACACCCCTGGACTTGTGGAAGCTGGATATGTCAATCACCAAGCTCTCGAGTTAATC  401

Query  146  AAAGGGTTTAGGTTTCTTGTGAACAGAACCATAGATGTC-T--TCTATGTTGATCGTTTG  202
            |||  |    ||||||||||||||||||| ||||||||| |  |||||||||||||||||
Sbjct  402  AAA--G----GGTTTCTTGTGAACAGAACAATAGATGTCTTGCTCTATGTTGATCGTTTG  455

Query  203  GATGTGTATAGAGTCGATGAGCTAGATAAGCAAGTTGTGA-AGGCAATCACCCAAACCTT  261
            |||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct  456  GATGTGTATAGAGTCGATGAGCTAGATAAGCAAGTTGTTATAG-CAATCACCCAAACCTT  514

Query  262  TGGAAAAGAGATATATGGTG-AAAATTCTTGCTTGTTCTGACTCATGCTCAGTTTTCCCC  320
            ||||||||||||||  |||| ||||  |||||||||||||||||||||||| ||||||||
Sbjct  515  TGGAAAAGAGATAT--GGTGCAAAAC-CTTGCTTGTTCTGACTCATGCTCAATTTTCCCC  571

Query  321  T  321
            |
Sbjct  572  T  572



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5