BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935618 Length=321 Score E Sequences producing significant alignments: (Bits) Value AT1G02280.1 | Symbols: TOC33, ATTOC33, PPI1 | translocon at the... 425 1e-118 > AT1G02280.1 | Symbols: TOC33, ATTOC33, PPI1 | translocon at the outer envelope membrane of chloroplasts 33 | chr1:448463-450425 REVERSE LENGTH=1173 Length=1173 Score = 425 bits (230), Expect = 1e-118 Identities = 280/301 (93%), Gaps = 15/301 (5%) Strand=Plus/Plus Query 26 GCTGAAGGATTGAGACCAGTGATGGTTTCAAGAACAATGGGAGGGTTCACTATCAACATT 85 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 GCTGAAGGATTGAGACCAGTGATGGTTTCAAGAACAATGGGAGGGTTCACTATCAACATT 341 Query 86 ATTGACACCCCTGGACTTGTGGAAGCTGAATATGTCAATCACCAAGCCCTCGAGTTAATC 145 |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 342 ATTGACACCCCTGGACTTGTGGAAGCTGGATATGTCAATCACCAAGCTCTCGAGTTAATC 401 Query 146 AAAGGGTTTAGGTTTCTTGTGAACAGAACCATAGATGTC-T--TCTATGTTGATCGTTTG 202 ||| | ||||||||||||||||||| ||||||||| | ||||||||||||||||| Sbjct 402 AAA--G----GGTTTCTTGTGAACAGAACAATAGATGTCTTGCTCTATGTTGATCGTTTG 455 Query 203 GATGTGTATAGAGTCGATGAGCTAGATAAGCAAGTTGTGA-AGGCAATCACCCAAACCTT 261 |||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| Sbjct 456 GATGTGTATAGAGTCGATGAGCTAGATAAGCAAGTTGTTATAG-CAATCACCCAAACCTT 514 Query 262 TGGAAAAGAGATATATGGTG-AAAATTCTTGCTTGTTCTGACTCATGCTCAGTTTTCCCC 320 |||||||||||||| |||| |||| |||||||||||||||||||||||| |||||||| Sbjct 515 TGGAAAAGAGATAT--GGTGCAAAAC-CTTGCTTGTTCTGACTCATGCTCAATTTTCCCC 571 Query 321 T 321 | Sbjct 572 T 572 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14929521453 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5