BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935642

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46600.1 | Symbols:  | Calcium-binding EF-hand family protei...   850    0.0  


> AT2G46600.1 | Symbols:  | Calcium-binding EF-hand family protein 
| chr2:19136019-19136600 FORWARD LENGTH=582
Length=582

 Score =  850 bits (460),  Expect = 0.0
 Identities = 506/528 (96%), Gaps = 4/528 (1%)
 Strand=Plus/Plus

Query  1    AGAGTTCACCAAAATCTATTCTCTCTCTTCTATTATCTTCCTCTAATGGAACCAACCGAG  60
            ||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||
Sbjct  7    AGAGTTCACCAAAATCTCTTCTCTCTCTTCCATTGTCTTCCTCTAATGGAACCAACCGAG  66

Query  61   AAATCCATGATACTAGAAACTACCACTACGACGAAGATGGAGACCAAATACGAAGATATG  120
            ||||| ||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct  67   AAATCTATGTTACTAGAAACTACTAGTACCACGAAGATGGAGACCAAATACGAAGATATG  126

Query  121  TTGCCAGTTATGGCGGAGAAGATGGATGTTGAAGAGTTTGTATCAGAGTTATGCAAAGGT  180
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  127  TTACCAGTTATGGCGGAGAAGATGGATGTTGAAGAGTTTGTATCAGAGTTATGCAAAGGT  186

Query  181  TTCAGTTTGCTTGCGGATCCAGAGAGAGATCTCATCACAGCTGAGTCTCTAAGACGAAAC  240
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  187  TTCAGTTTGCTTGCGGATCCAGAGAGACATCTCATCACAGCTGAGTCTCTAAGACGAAAC  246

Query  241  TCTGGGATACTTGGGATTCAAGGTATGAGCAAGGAAGATGCTCAAGGAATGGTTAGAGAA  300
            || ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  247  TCAGGGATACTTGGAATTGAAGGTATGAGCAAGGAAGATGCTCAAGGAATGGTTAGAGAA  306

Query  301  GGAGACCTTGATGGAGATGGTGCTCTTAACCAAACCGAATTCTGCGTTCTCATGGTTCGG  360
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  307  GGAGACCTCGATGGAGATGGTGCTCTTAACCAAACCGAATTCTGCGTTCTCATGGTTCGG  366

Query  361  TTAAGCCCCGAGATGATGGAAGATGCGGAAACTTGGTTGGAGAAAGCACTCACCCAAGAA  420
            |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  367  TTAAGCCCTGAGATGATGGAAGACGCCGAAACTTGGTTGGAGAAAGCACTCACCCAAGAA  426

Query  421  CTATGTAATCACAATCTCTCTTCTATGCCTTGA-TCATC--CC-CCTTTCTTGTGTATTC  476
            ||||||||||||||||||||||||||||||||| | |||  || ||||||||||||||||
Sbjct  427  CTATGTAATCACAATCTCTCTTCTATGCCTTGAATGATCGTCCTCCTTTCTTGTGTATTC  486

Query  477  TCTTTTTACTTCTACAAAACCTATAAATGTTTCTGAATATAAAATGaa  524
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  487  TCTTTTTACTTCTACAAAACCTATAAATGTTTCTGAATATAAAATGAA  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25318010088


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5