BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935653

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46690.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   815    0.0  


> AT2G46690.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr2:19180730-19181467 FORWARD LENGTH=738
Length=738

 Score =  815 bits (441),  Expect = 0.0
 Identities = 478/495 (97%), Gaps = 6/495 (1%)
 Strand=Plus/Plus

Query  1    TAAAAACGTTTTC-AAAAATCATGGGCACCGGAGAAAAACCCCTGAAGAGCTTCCAGTTA  59
            ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  154  TAAAAACGTTTTCAAAAAATCATGGGCACCGGAGAAAAAACCCTGAAGAGCTTCCAGTTA  213

Query  60   CATCGCAAACAATCAGTCAAAGTCAAAGATGTTCCAAAAGGGTGTTTAGCGATCAAAGTG  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  214  CATCGCAAACAATCAGTCAAAGTCAAAGATGTTCCAAAAGGGTGTTTAGCGATCAAAGTG  273

Query  120  GGATCACAAGGAGAAGAGCAACAGAGATTTATTGTTCCTGTTTTGTATTTTAACCATCCA  179
            ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  274  GGATCGCAAGGAGAAGAGCAACAGAGATTTATCGTTCCTGTTTTGTATTTTAACCATCCA  333

Query  180  TTGTTCATGCAGCTCCTGAAAGAAGCAGAAGACGAGTATGGATTCGATCAAAAGGGCACC  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  334  TTGTTCATGCAGCTCCTGAAAGAAGCAGAAGACGAGTATGGATTCGATCAAAAGGGCACC  393

Query  240  ATCACAATTCCTTGTCACGTGGAGGAGTTTCGTTACGTTCAAGCTTTGATTGATGGAGAG  299
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  394  ATCACAATTCCTTGTCACGTGGAGGAGTTTCGTTACGTTCAAGCTTTGATAGATGGAGAG  453

Query  300  AGATCGGTTTATAATGGTAACAACAATCATCATAGACATGGTGGCCGTGACCAGTATCAT  359
            ||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  454  AGATCAGTTTACAATGGTAACAACCATCATCATAGACATGGTGGCCGTGACCAGTATCAT  513

Query  360  CATCTTGTTGGATGCTTCAGAGCTtgatgaatgatgatgaaa--a--tgatgaGTAGTGA  415
            |||||||||||||||||||||||||||||||| |||||||||  |  ||||| || ||||
Sbjct  514  CATCTTGTTGGATGCTTCAGAGCTTGATGAATAATGATGAAATGAAATGATGGGTGGTGA  573

Query  416  TTGTATGTGTTCAAATTTTAATGTTTTTA-TGGTTTAATCTTGTGGAGTTGTGGAGCCAA  474
            ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct  574  TTGTATGTGTTCAAATTTTAATGTTTTTTCTGGTTTAATCTTGTGGAGTTGTGGAGCCAA  633

Query  475  AACTGGCCTAACCCA  489
            |||||||||||||||
Sbjct  634  AACTGGCCTAACCCA  648



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23308644208


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5