BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935667 Length=1881 Score E Sequences producing significant alignments: (Bits) Value AT2G46830.1 | Symbols: CCA1 | circadian clock associated 1 | ch... 2929 0.0 > AT2G46830.1 | Symbols: CCA1 | circadian clock associated 1 | chr2:19245672-19248909 FORWARD LENGTH=2268 Length=2268 Score = 2929 bits (1586), Expect = 0.0 Identities = 1781/1873 (95%), Gaps = 22/1873 (1%) Strand=Plus/Plus Query 8 GAGGAGCTTAGTGATGGAGACAAATTCGTCTGGAGAAGATCTGGTTATTAAGACTCGGAA 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 GAGGAGCTTAGTGATGGAGACAAATTCGTCTGGAGAAGATCTGGTTATTAAGACTCGGAA 296 Query 68 GCCATATACGATAACGAAGCAACGTGAAAGGTGGACTGAGGAAGAACATAATAGATTCAT 127 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 GCCATATACGATAACAAAGCAACGTGAAAGGTGGACTGAGGAAGAACATAATAGATTCAT 356 Query 128 TGAAGCTTTGAGGCTTTATGGTAGAGCATGGCAAAAGATTGAAGAACATGTAGCAACGAA 187 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 357 TGAAGCTTTGAGGCTTTATGGTAGAGCATGGCAGAAGATTGAAGAACATGTAGCAACAAA 416 Query 188 AACTGCTGTTCAGATAAGAAGTCACGCTCAGAAATTTTTCTCCAAGGTAGAGAAAGAGGC 247 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 AACTGCTGTCCAGATAAGAAGTCACGCTCAGAAATTTTTCTCCAAGGTAGAGAAAGAGGC 476 Query 248 TGAAGCTAAAGGTGTAGCTATGGGTCAAGCGCTAGATATAGCTATTCCTCCTCCACGGCC 307 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 477 TGAAGCTAAAGGTGTAGCTATGGGTCAAGCGCTAGACATAGCTATTCCTCCTCCACGGCC 536 Query 308 TAAGCGTAAACCAAGCAATCCTTATCCTAGAAAGACGGGAAGTGGAA-GTATCCCGATGT 366 |||||||||||||| ||||||||||||| |||||||||||||||||| | |||| |||| Sbjct 537 TAAGCGTAAACCAAACAATCCTTATCCTCGAAAGACGGGAAGTGGAACG-ATCCTTATGT 595 Query 367 TAACAGCGGGTGTGAATGATGGACAAGAGTCCCTTGGATCAGAAAAAGTGTCCCATCCTG 426 || | ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 596 CAAAAACGGGTGTGAATGATGGAAAAGAGTCCCTTGGATCAGAAAAAGTGTCGCATCCTG 655 Query 427 AGATGGCCAATGAAGATCGACAACAATCAAAGCCTGAAGAGAATAATAATCTGCAGGAAG 486 ||||||||||||||||||||||||||||||||||||||||| | || | ||||||||||| Sbjct 656 AGATGGCCAATGAAGATCGACAACAATCAAAGCCTGAAGAG-A-AA-ACTCTGCAGGAAG 712 Query 487 AAAACTGTTCAGATTGTTTCACTCATCAGTACCTCTCTGCTGCATCCTCCATGAATAAAA 546 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 713 ACAACTGTTCAGATTGTTTCACTCATCAGTATCTCTCTGCTGCATCCTCCATGAATAAAA 772 Query 547 GTTCTATAGAGACATCAAATGCAAGCACTTTCCGCGAGTTCTTGCCTTCACGGGAAGAGG 606 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 773 GTTGTATAGAGACATCAAACGCAAGCACTTTCCGCGAGTTCTTGCCTTCACGGGAAGAGG 832 Query 607 GAAGTCAGAATAACAGGATAAGAAAGGAGTCAAACTCAGAGAATTACTGTGATTTGAATG 666 ||||||||||||||||| ||||||||||||||||||| | |||||||||| Sbjct 833 GAAGTCAGAATAACAGGGTAAGAAAGGAGTCAAACTC--------A----GATTTGAATG 880 Query 667 CAAAATCTCTAGAAACCGATAATGAGCAAGGACCTCAGACTTATCCAATGCGTATCCCTG 726 |||||||||| |||| || ||||||||||||||||||||||||||| |||| |||||||| Sbjct 881 CAAAATCTCTGGAAAACGGTAATGAGCAAGGACCTCAGACTTATCCGATGCATATCCCTG 940 Query 727 TGCTAGTGCCATTGGGGAGCTCAATAACAAGTTCTCTATCACATCCTCCTTCAGAGCCAG 786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 941 TGCTAGTGCCATTGGGGAGCTCAATAACAAGTTCTCTATCACATCCTCCTTCAGAGCCAG 1000 Query 787 ACAGTCATCCCCACATTGTTGCAGGAGATTATCAGTCGTTTCCTAATCATATAATGTCAA 846 | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1001 ATAGTCATCCCCACACAGTTGCAGGAGATTATCAGTCGTTTCCTAATCATATAATGTCAA 1060 Query 847 CCCTTTTACAAACACCGGCTCTCTATACTGCCGCAACTTTCGCCTCATCATTTTGGCCTC 906 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1061 CCCTTTTACAAACACCGGCTCTTTATACTGCCGCAACTTTCGCCTCATCATTTTGGCCTC 1120 Query 907 CCGATTCTAGTGGTAGCCCACCTGTTCAAGGGAACTCACCTCCGAATCTGGCTGCTATGG 966 |||||||||||||| || ||||||||| ||||||||||||||||||||||||||| |||| Sbjct 1121 CCGATTCTAGTGGTGGCTCACCTGTTCCAGGGAACTCACCTCCGAATCTGGCTGCCATGG 1180 Query 967 CCGCTGCCACTGTTGCAGCTGCAAGTGCTTGGTGGGCTGCCAATGGATTGTTACCTTTAT 1026 |||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1181 CCGCAGCCACTGTTGCAGCTGCTAGTGCTTGGTGGGCTGCCAATGGATTATTACCTTTAT 1240 Query 1027 GTGCTCCTCTTAGTTCAGGTGGTTTCACTAGTCATCCTCCATCTACTTTTGGACCATCCG 1086 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1241 GTGCTCCTCTTAGTTCAGGTGGTTTCACTAGTCATCCTCCATCTACTTTTGGACCATCAT 1300 Query 1087 GTGATGTAGAGTACACAAAAACAAGCACTTTACAGCATGTTTCTGCGCAGAGCCGAGAGC 1146 |||||||||||||||||||| ||||||||||||| |||| ||||| |||||||||||||| Sbjct 1301 GTGATGTAGAGTACACAAAAGCAAGCACTTTACAACATGGTTCTGTGCAGAGCCGAGAGC 1360 Query 1147 AAGAACACTCTGAGGCATCAAAGGCTCGATCTTCATTGGACTCAGAGGA-GATTGAAAAT 1205 |||||||||| |||||||||||||||||||||||| ||||||||||||| | |||||||| Sbjct 1361 AAGAACACTCCGAGGCATCAAAGGCTCGATCTTCACTGGACTCAGAGGATG-TTGAAAAT 1419 Query 1206 AAGAGTAAACCAGATTGTCATGAGCAGCCTTCTGCAACATCTGAGAGTGATGCAAAGGGT 1265 ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1420 AAGAGTAAACCAGTTTGTCATGAGCAGCCTTCTGCAACACCTGAGAGTGATGCAAAGGGT 1479 Query 1266 TCAGATGGAGCAGGAGACAGAAAACAAGTTGACCGGTCTTCGTGTGGCTCAAACACTCCC 1325 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1480 TCAGATGGAGCAGGAGACAGAAAACAAGTTGACCGGTCCTCGTGTGGCTCAAACACTCCG 1539 Query 1326 TCGAGTAGTGATGATGTTGAGGCGGATGCATCAGAGAGGCAAGAGGATGGCACCAATGGT 1385 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1540 TCGAGTAGTGATGATGTTGAGGCGGATGCATCAGAAAGGCAAGAGGATGGCACCAATGGT 1599 Query 1386 GAGGTGAAAGAAATGAATGAAGACACTAATAATCCTCAAACTTCAGAGTCCAATGCACGC 1445 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1600 GAGGTGAAAGAAACGAATGAAGACACTAATAAACCTCAAACTTCAGAGTCCAATGCACGC 1659 Query 1446 CGCAGTAGAATCAGCTCCAATATAACCGATCCTTGGAAGTCTGTGTCTGACGAGGGTCGA 1505 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1660 CGCAGTAGAATCAGCTCCAATATAACCGATCCATGGAAGTCTGTGTCTGACGAGGGTCGA 1719 Query 1506 ATTGCCTTCCAAGCTCTCTTCTCCAGAGAGGTACTACCGCAAAGCTTTACATATCGAGAA 1565 ||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| Sbjct 1720 ATTGCCTTCCAAGCTCTCTTCTCCAGAGAGGTATTGCCGCAAAGTTTTACATATCGAGAA 1779 Query 1566 GAACACAGAGAGGAGGaacaacaacaacaa---caaAGATATCCAATGGCACTTGATCTT 1622 |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1780 GAACACAGAGAGGAAGAACAACAACAACAAGAACAAAGATATCCAATGGCACTTGATCTT 1839 Query 1623 AACTTCACAGCTCAGTTAACTCCAGTTGATGATCAAGAGGAGAGGAGAAACACAGGATTT 1682 |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 1840 AACTTCACAGCTCAGTTAACACCAGTTGATGATCAAGAGGAGAAGAGAAACACAGGATTT 1899 Query 1683 CTCGGAATCGGATTGGATGCTTCAAAGCTGATAAGTAGAGGAAGAACAGGTTTCAAACCA 1742 || ||||||||||| |||||||||||||| || |||||||||||||||||||| |||||| Sbjct 1900 CTTGGAATCGGATTAGATGCTTCAAAGCTAATGAGTAGAGGAAGAACAGGTTTTAAACCA 1959 Query 1743 TATAAAAGATGTTCCATGGAAGCCAAAGAAAGTAGAATCCTCAACACCAATCCTATCATT 1802 || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1960 TACAAAAGATGTTCCATGGAAGCCAAAGAAAGTAGAATCCTCAACAACAATCCTATCATT 2019 Query 1803 CATGTGGAACAGAAAGACCCCAAACGGATGAGGTTGGAAAGTCAAGCTTCGACATGAAAC 1862 ||||||||||||||||| |||||||||||| ||||||||| ||||||||| |||||| || Sbjct 2020 CATGTGGAACAGAAAGATCCCAAACGGATGCGGTTGGAAACTCAAGCTTCCACATGAGAC 2079 Query 1863 TCTATTTTCATCT 1875 ||||||||||||| Sbjct 2080 TCTATTTTCATCT 2092 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93122010975 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5