BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935674
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46910.1 | Symbols: | Plastid-lipid associated protein PAP ... 1434 0.0
> AT2G46910.1 | Symbols: | Plastid-lipid associated protein PAP
/ fibrillin family protein | chr2:19272281-19274002 FORWARD
LENGTH=1055
Length=1055
Score = 1434 bits (776), Expect = 0.0
Identities = 851/887 (96%), Gaps = 5/887 (1%)
Strand=Plus/Plus
Query 13 GTTCGAAAATGGATCGAATTGCGTCTGCGACCTTCTCTTGCCCTGCGATTTCAATGTCTC 72
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 47 GTTCGAAAATGGATCGAATTGCGTCTGCGACTTTCTCTTGCCCTGCGATTTCATTGTCCC 106
Query 73 GCGTCTGTAGAATCAACCCTTTTGGCTCAAACATTAACACCAATCATAGAAAGAGATTCT 132
||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||
Sbjct 107 GCGTCTGTAGAATCAGCCCTTTTGGCTTAAACATTAAAACCAACCATAGAAAGAGATTCT 166
Query 133 CGTGTCCTA-TAGCTGTAGCTTCTGGAGAGACGACGG-CTCGG--GTCGTAGACAATGAA 188
||||| | | |||||||||||||||||||||| ||| | || ||||| |||||||||
Sbjct 167 CGTGT-CGAGTAGCTGTAGCTTCTGGAGAGACTTCGGCCAGGGTCGTCGTCGACAATGAA 225
Query 189 CTTGACTTAGAACACAAGAAACACGATCTGCTGAGAGCTGTTCAAGACACTCAACGAGGG 248
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 226 CTTGACTTAGAACACAAGAAACACGATCTACTGAGAGCTGTTCAAGACACTCAACGAGGA 285
Query 249 CTCACTGCCACTTCTGATCAACGATCTATCATCGAGGAGGCTCTGGTGACTGTGGAAGGG 308
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 286 CTCACTGCCACTTCTGATCAACGATCTATCATTGAGGAGGCTCTGGTGACTGTGGAAGGG 345
Query 309 TTTAATGGCGGTGAAGAAATCGATCTAGTGAAGTTAGATGGAACATGGAGGCTACAATAT 368
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 346 TTTAATGGCGGTGAAGAAATTGATCCAGTGAAGTTAGATGGAACATGGAGGCTACAATAT 405
Query 369 ACATCTGCACCTGATGTTGTTGTTCTGTTTGAAGCTGCTTCAAGACTTCCCTTCTTTCAG 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 ACATCTGCACCTGATGTTGTTGTTCTGTTTGAAGCTGCTTCAAGACTTCCCTTCTTTCAG 465
Query 429 GTGGGGCAGGTCTTCCAGAAGTTTGAGTGCAGAGATCGATCAGACGGTGGGATCATTCGG 488
|| ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 466 GTAGGGCAGGTCTTTCAGAAGTTTGAGTGCAGAGATAGATCCGACGGTGGGATCATTCGG 525
Query 489 AATGTTGTTCAGTGGAGTCTTCCAAGCTTGTTGGAGGAGCAAGAAGGTGCAACACTTGTT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 AATGTTGTTCAGTGGAGTCTTCCAAGCTTGTTGGAGGAGCAAGAAGGTGCAACACTTGTT 585
Query 549 GTTACCGCGAAATTCGATAAGGTCTCTAGTCGAAACATCTACCTTCAGTTTGAAGAGATA 608
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GTTACCGCGAAATTTGATAAGGTCTCTAGTCGAAACATCTACCTTCAGTTTGAAGAGATA 645
Query 609 AGTGTTAGAAACATTAACATCAATGAGCAGCTTCAAGCTCTTATCGCACCTGCAATACTT 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AGTGTTAGAAACATTAACATCAATGAGCAGCTTCAAGCTCTTATCGCACCTGCAATACTT 705
Query 669 CCACGCTCATTTTTAAGCCTACAGCTTTTGCAGTTTATCCGTACTTTCAAAGCTCAGATT 728
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 CCACGCTCATTTCTAAGCCTACAGCTTTTGCAGTTTATCCGTACTTTCAAAGCTCAGATT 765
Query 729 CCAGTAACCGCAACCAGCCCAGGAAGGAGATCTGTTGGTGGATTGTATTACCTGTCGTAT 788
||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 766 CCAGTAAACGCAACCAGCCCAGGAAGGAGATCTGTAGGTGGATTGTATTACCTATCGTAT 825
Query 789 CTCGATAATAACATGCTTTTGGGTCGGTCTGTAGGAGGAGGAGGAGTATTTGTCTTTACA 848
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 826 CTCGATAACAACATGCTTTTGGGACGGTCTGTAGGAGGAGGAGGAGTATTTGTCTTTACA 885
Query 849 AAATCTCAACCCCTCGAGCTGTGAGAATCAGACAAATCTATATAACT 895
||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 886 AAATCTCAACCCCTCGAGCTGTGAGCATCAGACAAATCTATAAAACT 932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43703707890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5