BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935682 Length=1282 Score E Sequences producing significant alignments: (Bits) Value AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-... 1927 0.0 > AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-like 1 | chr2:19295490-19297826 REVERSE LENGTH=1526 Length=1526 Score = 1927 bits (1043), Expect = 0.0 Identities = 1213/1294 (94%), Gaps = 15/1294 (1%) Strand=Plus/Plus Query 1 GCTTTGTTCAGTTCACTTCAATGGAAG-AAAAGCCCTTAGCATCATCATCATCTCAACCA 59 ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||| Sbjct 129 GCTTTGTTCAGTTTACTTCAATGGAAGCAAAA-CCCTTAGCATCATCATCATCTGAACCA 187 Query 60 AACATGATTTCTCCATCATCAAGCTTTAAACCAAAATTAAAAGATCAAGATTATATGGAG 119 |||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| Sbjct 188 AACATGATTTCTCCATCATCAAACATTAAACCAAAATTAAAAGATGAAGATTATATGGAG 247 Query 120 CTGGTGTGTGAAAATGGGCAGATTCTTGCAAAGGGTCGAAGA-CACAAGAACAACGGTTC 178 ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| Sbjct 248 CTGGTGTGTGAAAATGGGCAGATTCTTGCAAAGATTCGAAGACCA-AAGAACAACGGTTC 306 Query 179 TTTTCAAAATCAACGTAGGCAATCTCTCTTGGATTTGTATGAGACCGAGTACAGTGAGGG 238 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 307 TTTTCAAAAGCAACGTAGGCAATCTCTCCTGGATTTGTATGAGACCGAGTACAGCGAGGG 366 Query 239 TTTCAAGAAAAACATCAAGAATCTTGGTGATACACAAGTTGTTCCTGTGAATGAGTCTCA 298 |||||||||||||||||||| |||||| || |||||||||||||| |||| | ||||| | Sbjct 367 TTTCAAGAAAAACATCAAGATTCTTGGAGACACACAAGTTGTTCCGGTGAGTCAGTCTAA 426 Query 299 GCCACAACAAGATAAAGAAAACAATGAACATATG------AATAAGAAGAAGCTTAAGTC 352 |||||||||||||||||||| ||||||||| ||| |||||||||||||| ||||| Sbjct 427 GCCACAACAAGATAAAGAAACCAATGAACAAATGAACAACAATAAGAAGAAGCTAAAGTC 486 Query 353 CTCCAAAATCGAATTTGAGAGAAATGTTTCGAAAAGCAACAAACGTTTTGAATCATCAAC 412 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 487 CTCCAAAATCGAATTTGAGAGAAATGTTTCGAAAAGCAACAAATGTGTTGAATCATCAAC 546 Query 413 ATTAATTGATG-AT-T-CTAAAGGTCCAAAGAATGTTGAAGTTACTAGAACTCCTCCTGA 469 ||||||||||| | | |||||||||||||||||||||||||||||| | |||||||||| Sbjct 547 ATTAATTGATGTTTCTGCTAAAGGTCCAAAGAATGTTGAAGTTACTACAGCTCCTCCTGA 606 Query 470 TGAGCAATCTGCAGCAGTTGGTAGATCCACGGAATTGTATTTTGCTTCTTCATCGATGTT 529 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 607 TGAGCAATCTGCAGCTGTTGGTAGATCCACGGAATTGTATTTTGCTTCTTCATCGAAGTT 666 Query 530 TTCTCGAGGAACTTCGAGAGATCTAAGTT-TATGTTCTTTAAAGAGGAAGCATGGAGACA 588 ||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| | Sbjct 667 TTCTCGAGGAACTTCGAGAGATCTAAGTTGT-TGTTCTTTAAAGAGGAAGTATGGAGATA 725 Query 589 TTGAAGAAGAAGAATCAACCTATTTAAGTAATAATTCCGATGATGAATCAGATGATGCGA 648 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 726 TTGAAGAAGAAGAATCAACCTATTTAAGTAATAATTCAGATGATGAATCAGATGATGCGA 785 Query 649 AGACACAAGTTCATGCGAGAACAAGAAAGCCGGTGACTAAGAGAAAACGAAGCACAGAAG 708 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 786 AGACACAAGTTCATGCGAGAACAAGAAAGCCGGTGACTAAAAGAAAACGAAGCACAGAAG 845 Query 709 TATATAAGTTATATGAAAGAAAGCGAAGAGATGAATTCAACAAGAAAATGCGTGCTTTGC 768 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 846 TCCATAAGTTATATGAAAGAAAACGAAGAGATGAATTCAACAAGAAAATGCGTGCTTTGC 905 Query 769 AGGACATACTACCAAACTGTTACAAGGATGATAAGGCATCATTGTTGGATGAGGCTATCA 828 ||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 906 AGGACCTACTACCAAATTGTTACAAGGATGATAAGGCTTCATTGTTGGATGAGGCTATCA 965 Query 829 AATATATGAGGACCCTTCAACATCAAGTTCAGATGATGAGTATGGGAAATGGATTAATAC 888 |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 966 AATATATGCGGACCCTTCAACTTCAAGTTCAGATGATGAGTATGGGAAATGGATTAATAA 1025 Query 889 GACCACCTATGATGTTGCCAATGGGTCATTACCCTCCCATGGGTCTAGGAATGCATGTGG 948 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1026 GACCACCTACGATGTTGCCAATGGGTCATTACTCTCCCATGGGTCTAGGAATGCATATGG 1085 Query 949 GTGCAGCAGCAACACCAACATCAGTACCGCAATTCCTACCTATGAATGTTCAAGGAACCA 1008 ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| Sbjct 1086 GTGCAGCAGCAACACCAACATCAATACCGCAATTCCTGCCTATGAATGTTCAAGCAACCG 1145 Query 1009 GTTTTCCCGGGATTAACAATGCATCATCACAAATGCTAAGCTTTCTTAATCACCCCACAG 1068 ||||||| ||||| ||||||||| || |||||||||||||||||||||||||||| | | Sbjct 1146 GTTTTCCGGGGATGAACAATGCACCACCACAAATGCTAAGCTTTCTTAATCACCCAAGTG 1205 Query 1069 GACTAATCCCAAACACTCCTATCTTTTCTCCATTGGAAAATTGCTCTCAGCAATTCGTGG 1128 ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1206 GACTAATTCCAAACACTCCTATCTTTTCTCCATTGGAAAATTGCTCTCAGCCATTCGTGG 1265 Query 1129 TGCCTTCGTGTGTTCCTCAGACTCATGCTACTTCTTTTACTCAATTCCCAAAGTCTGCGT 1188 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1266 TGCCTTCGTGTGTTTCTCAGACTCAGGCTACTTCTTTTACTCAATTCCCAAAGTCTGCGT 1325 Query 1189 CCACCTCAAACTTAGAAGATGCAATGCAGTATAGAGGAAGCAACGGTTATAGTTATTATC 1248 || ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 1326 CCGCCTCAAACTTAGAAGATGCAATGCAATATAGAGGAAGCAACGGTTTTAGTTATTATC 1385 Query 1249 CCTCGCAAAACTAAAGATTTGTAGGTAGTTGATG 1282 ||||| ||||||| ||||||||| |||||||| Sbjct 1386 GCTCGCCAAACTAATGATTTGTAGAAAGTTGATG 1419 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63051884520 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5