BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935733 Length=1143 Score E Sequences producing significant alignments: (Bits) Value AT2G47450.1 | Symbols: CAO, CPSRP43 | chloroplast signal recogn... 1685 0.0 > AT2G47450.1 | Symbols: CAO, CPSRP43 | chloroplast signal recognition particle component (CAO) | chr2:19472681-19474314 FORWARD LENGTH=1634 Length=1634 Score = 1685 bits (912), Expect = 0.0 Identities = 1082/1159 (93%), Gaps = 32/1159 (3%) Strand=Plus/Plus Query 1 ATGCAAAAGGTCTTCTTGGCCATGGATACGTGTGCTCTAGTTATCCATCAGTCTCTGTCT 60 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 101 ATGCAAAAGGTCTTCTTGGCCATGGATACTTGTGCTCTAGTAATCCATCAGTCTCTGTCT 160 Query 61 CGCATCAAACTTTCTCCTCCCAAATCTTCTTCTTC-TGGT-TTCT-C--TCT----TGAA 111 ||||||||||||||||||||||||||||||||||| | | |||| | ||| |||| Sbjct 161 CGCATCAAACTTTCTCCTCCCAAATCTTCTTCTTCTTCTTCTTCTGCTTTCTCCCCTGAA 220 Query 112 T-CTCTACCGATCAGACGGATCCAGCTGTGTTTCCGAGGAGCAAGATGTGCCGCCGTACa 170 | || ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| Sbjct 221 TCCT-TACCGATCAGACGGATCGAGCTGTGTTTCCGAGGAGCTATATGTGCCGCCGTACA 279 Query 171 aaaaaaCTACGAAGAAACGACCTCCTCCGTGGATGAGG-A-A-GACGATGATGA-TGA-- 224 || |||||||||||||||||||||||||||||| |||| | | || |||||||| | | Sbjct 280 AAGAAACTACGAAGAAACGACCTCCTCCGTGGAAGAGGCAGAGGAAGATGATGAGTCATC 339 Query 225 GTCATCGTACGGAGAAGTGAAGAGGATCATTGGAAGTCGAACGGCGGCGGAATTAGGAGC 284 |||||||||||||||||||| | |||||||||||| |||||||||| || | |||||| Sbjct 340 ATCATCGTACGGAGAAGTGAACAAGATCATTGGAAGCCGAACGGCGG-GGGA--AGGAGC 396 Query 285 CATGGAGTATCTTATCGAGTGGAAGGACGGCCATTCTCCGTCGTGGGTTCCATCGAGCTA 344 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 397 CATGGAGTACCTTATCGAGTGGAAGGACGGCCATTCTCCGTCGTGGGTTCCATCGAGCTA 456 Query 345 CATCGCAGCAGACGTGGTGTCGGAGTACGAGACACCCTGGTGGACGGCAGCTAGGAAAGC 404 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 457 CATCGCAGCAGACGTAGTGTCGGAGTACGAGACACCCTGGTGGACGGCAGCTAGAAAAGC 516 Query 405 CGACGAGCAGGCCCTGTCACAGCTTCTGGAGGACCGAGACGTCAACGCCGTAGACGAGAA 464 |||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||| || Sbjct 517 CGACGAGCAGGCCCTGTCACAGCTCCTGGAGGACCGAGACGTCGATGCCGTGGACGAAAA 576 Query 465 CGGCAGGACGGCTCTGCTTTTCGTGGCAGGTCTGGGGTCAGACAAGTGCGTAAGGCTTCT 524 |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 577 CGGCCGGACGGCTCTGCTTTTCGTGGCAGGTCTGGGGTCGGACAAGTGCGTAAGGCTTCT 636 Query 525 GGCGGAGGCTGGAGCCGATCTCGACCACCGAGACATGAgggggggCTTGACGGCGCTGCA 584 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 637 GGCGGAGGCTGGAGCCGATCTCGACCACCGAGACATGAGGGGAGGCTTGACGGCGCTGCA 696 Query 585 CATGGCGGCTGGTTACGTGAAGCCGGAGGTGGTGGAGGCGCTGGTGGAGCTGGGCGCTGA 644 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 697 CATGGCGGCTGGTTACGTGAGGCCGGAGGTGGTGGAGGCGCTGGTGGAGCTGGGAGCTGA 756 Query 645 TATTGAAGTGGAAGACGAGAGAGGGTTAACGGCGTTGGAACTAGCGAGGGAGATTCTGAA 704 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 757 TATTGAAGTGGAAGACGAGAGAGGGTTAACGGCGTTGGAACTAGCGAGGGAGATTCTGAA 816 Query 705 GACGACGCCAAAGGGGAATCCGATGCAGTTCGGGAGGAGAATTGGGTTAGAGAAAGTGAT 764 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 817 GACGACGCCGAAGGGGAATCCGATGCAGTTCGGGAGGAGAATTGGGTTAGAGAAAGTGAT 876 Query 765 CAATGTCCTCGAAGGACAAGTGTTCGAGTACGCGGAGGTGGAGGAGATCGTAGAGAAACG 824 ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 877 CAATGTCCTGGAAGGACAAGTGTTCGAGTACGCCGAGGTGGATGAGATCGTAGAGAAACG 936 Query 825 AGGGAAAGGCAAAGACGTTGAATATCTGGTCAGATGGAAGGACGGTGAAGATTGCGAGTG 884 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 937 AGGGAAAGGCAAAGACGTTGAATATCTGGTCAGATGGAAGGACGGTGGAGATTGCGAGTG 996 Query 885 GGTGAAAGGCGTACACGTGGCGGAAGATGTGGCCAAGGACTACGAGGATGGGCTGGAGTA 944 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 997 GGTGAAAGGTGTACACGTGGCGGAAGATGTGGCTAAGGACTACGAGGATGGGCTGGAGTA 1056 Query 945 CGCTGTAGCAGAGAGGGTGATCGGGAAGAGGGTGGCAGACGATGGGAAGACCATCGAGTA 1004 ||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1057 CGCTGTAGCGGAGAGTGTGATCGGGAAGAGGGTGGGAGACGATGGGAAGACCATCGAGTA 1116 Query 1005 TCTTGTCAAATGGACTGATATGTCTGATGCCACTTGGGAGCCTCAAGACAATGTCGACTC 1064 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1117 TCTTGTCAAATGGACTGATATGTCTGATGCCACTTGGGAGCCTCAGGACAATGTCGACTC 1176 Query 1065 TACACTTATTCTACTCTACCAACAAGAACAAGAACAACAACAACCAATGAATGAATGATT 1124 ||| ||| ||||||||| || | |||||||||||||||||||||||||||| Sbjct 1177 TACTCTTGTTCTACTCT----AC-----C---AACAACAACAACCAATGAATGAATGATT 1224 Query 1125 GATTTTCATGATGATATTC 1143 |||||| ||||| | |||| Sbjct 1225 GATTTTGATGATTACATTC 1243 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56074008765 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5