BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935759
Length=533
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47710.1 | Symbols: | Adenine nucleotide alpha hydrolases-l... 841 0.0
> AT2G47710.1 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr2:19554834-19556065 REVERSE LENGTH=809
Length=809
Score = 841 bits (455), Expect = 0.0
Identities = 510/536 (95%), Gaps = 6/536 (1%)
Strand=Plus/Plus
Query 1 CGCCGGCGAAC-A-GTGAAGGAGTCATGGCCACCGGAGATGAGAAATCGGTGATGGTCGT 58
||||||||||| | || | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 87 CGCCGGCGAACAACGT-CA-GAGTCATGGCCACCGGAGATGGGAAATCGGTGATGGTCGT 144
Query 59 CGGAGTCGACGACAGCGAGCAGAGCACTTACGCCTTGGAGTGGACCCTCGATCGCTTCTT 118
|||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 145 CGGAGTTGACGACAGCGAGCAGAGCACTTACGCCTTGGAGTGGACGCTCGATCGTTTCTT 204
Query 119 CGCTCCTTACGCTCCCAATTATCCGTTTAAGCTCTTCATCGTCCACGCCAAACCTAACGC 178
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 205 CGCTCCTTACGCTCCCAATTATCCTTTTAAGCTCTTCATCGTCCACGCCAAACCTAACGC 264
Query 179 CGTCTCCGCCGTTGGTCTCGCTGGTCCCGGAACTGCGGAGGTTGTACCTTATGTTGATGC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 CGTCTCCGCCGTTGGTCTCGCTGGTCCCGGAACTGCGGAGGTTGTACCTTATGTTGATGC 324
Query 239 TGATCTGAAGCGTACCGCTGCTAAGGTTGTCGAGAAAGCCAAAGCAATTTGTCAGAGCAA 298
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 TGATCTGAAGCATACCGCTGCTAAGGTTGTCGAGAAAGCCAAAGCAATTTGTCAGAGCAG 384
Query 299 ATCGGTTCATGGTGCGGTGGTCGAAGTTTTTGAAGGTGATGCAAGGAATATCCTATGTGA 358
|||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 385 ATCGGTTCATGGCGCGGTGATCGAAGTTTTCGAAGGTGATGCAAGGAATATCCTATGTGA 444
Query 359 AGTTGTAGATAAGCACCATGCTTCTATTCTTGTTGTGGGAAGCCATGGATATGGAGCTAT 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGTTGTAGATAAGCATCATGCTTCTATTCTTGTTGTGGGAAGCCATGGATATGGAGCTAT 504
Query 419 CAAGAGGGCGGTTCTCGGGAGCACGAGCGACTACTGCGCCCATCACGCTCATTGTTCGGT 478
||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||| |||||
Sbjct 505 CAAGAGGGCGGTTCTCGGGAGTACGAGTGACTACTGCGCTCATCATGCTCATTGCTCGGT 564
Query 479 CATGATCGTGAAGAAGCCTAAGATCAAGGTCTGAAACCCTAAGCAAAG-CTACTCG 533
||||||||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 565 GATGATCGTGAAGAAGCCTAAGATCAAGGTCTGAAACC-TAAGGGAAGGCTACTCG 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25518946676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5