BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935766
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47780.1 | Symbols: | Rubber elongation factor protein (REF... 1122 0.0
> AT2G47780.1 | Symbols: | Rubber elongation factor protein (REF)
| chr2:19570049-19571034 FORWARD LENGTH=905
Length=905
Score = 1122 bits (607), Expect = 0.0
Identities = 689/729 (95%), Gaps = 3/729 (0%)
Strand=Plus/Plus
Query 1 CAACGGCTCCAAGTTTTTGACAATGGCTGAAGAAGATGAGATAGTAGTCGAAGAAGAGCA 60
||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 6 CAACGGCACCAAGTCTTTGACAATGGCT---GAAGATGAAATAGTAGTCGAAGAAGAGCA 62
Query 61 ATCACAGCCACCGGAGGTTACTCCAGTGCCACCATCTTCTTCGCCCTCGCCTTCGTTAGT 120
||||||||||| |||| |||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 63 ATCACAGCCACAGGAGATTACTCCAGTTCCACCATCTTCTTCGTCTTCGCCTTCGTTAGT 122
Query 121 GGTGGAAGACGACGATGAGATGAAGCTCAAGCACTTGGAATTCATCCAAGTCGCGGCGGT 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 123 GGTGGAAGACGACGATGAGATGAAGCTCAAGCACTTGGAATTCATTCAAGTCGCGGCGGT 182
Query 181 TTACTTCGCCGCCTGTTTCTCCACGCTCTACGAGTTGGCTAAAGACAACGCTGGTCCCCT 240
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 183 TTACTTCGCCGCCTGTTTCTCGACCCTCTACGAGTTGGCTAAAGACAACGCTGGTCCACT 242
Query 241 CCAACTCGGTGTCGAAAACATCGAAGATTCCGTTCGAACCGTGCTTGCTCCATTATACGA 300
| ||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 243 CAAACTCGGCGTCGAGAACATTGAAGATTGCGTTCGAACCGTGCTTGCTCCATTATACGA 302
Query 301 CAAATTCCACGACGTTCCTTTCAAGCTTCTCCTCTTCGTCGATCGTAAGGTGGACGATGT 360
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 303 AAAATTCCACGACGTTCCTTTCAAGCTTCTCCTTTTCGTCGATCGTAAGGTGGACGATGT 362
Query 361 GTTCTTCGATGTTGAGACATACGTTCCTTCGCTGGTGAAGCAAGCTTCTAGCCAAGCACT 420
||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| ||
Sbjct 363 GTTCTTCGATGTTGAGACATATGTTCCGTCATTGGTGAAGCAAGCTTCTAGCCAAGCGCT 422
Query 421 CACGGTGGCCACAGAGGTGCAACGCGCCGGCGTTGTGGACACCACCAAGAGCATTGCGAG 480
|||||||||||| |||||||| ||| |||||||||||||||| |||||||||||||| ||
Sbjct 423 CACGGTGGCCACGGAGGTGCAGCGCACCGGCGTTGTGGACACTACCAAGAGCATTGCAAG 482
Query 481 GAGCGTCCGGGACAAGTACGAGCCTGTGGCAGAGTATTACGCTGCGACGCTGTGGCGTTT 540
||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||
Sbjct 483 AAGCGTCCGGGACAAGTACGAGCCAGCGGCAGAGTATTACGCAGCGACGCTGTGGCGTTT 542
Query 541 ACTGAATCAAGTGCCCTTGTTCCCTGAAGTTGCGCATTTAGTGATCCCCACGGCGTTTTA 600
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 ACTGAATCAACTGCCGTTGTTCCCTGAAGTTGCGCATTTAGTGATCCCCACGGCGTTTTA 602
Query 601 CTGGTCAGAGAAGTACAACGATGCTGTTCGTTACGTTGGCGACAGAGACTACTTTGGGGC 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 603 CTGGTCAGAGAAGTACAACGATGCGGTTCGTTACGTTGGCGACAGAGACTACTTTGGGGC 662
Query 661 AGAGTATCTACCCATGATTCCTATTGAGAAGATCTCTGATATTTTGGAACAAGATCAGTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 AGAGTATCTACCCATGATTCCTATTGAGAAGATCTCTGATATTTTGGAACAAGATCAGTG 722
Query 721 TCGATCTGA 729
|||| ||||
Sbjct 723 TCGAGCTGA 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5