BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935773
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47850.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 2364 0.0
> AT2G47850.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr2:19595673-19598581 FORWARD LENGTH=2149
Length=2149
Score = 2364 bits (1280), Expect = 0.0
Identities = 1403/1461 (96%), Gaps = 13/1461 (1%)
Strand=Plus/Plus
Query 1 CCAAATCCCTAAAAATAAGGACATGTATGCTCGCAATCCTCCCATCAATGGCTCACAATC 60
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 259 CCAAATCCCTAAATTTAAGGACATGTATGCTCGCAATCCTCCCCTCAATGGCTCACAATC 318
Query 61 TGCTCAAGCTCCCGACTGGACCACCCCCGGAGATGCCGATACTACTGGACTCGAAGAATC 120
||||||||||||||||||| ||||| | |||||||||||| | |||||| |||||||
Sbjct 319 TGCTCAAGCTCCCGACTGG---ACCCCTGCAGATGCCGATAC--C-GGACTCCAAGAATC 372
Query 121 GATGTGGCGATTAGGGTTGGGTAGCGAGTCGTACCCTGAGCGACTAGGTGCCCCTGACTG 180
||||||||||||||||||||||||||| |||||||||||| ||| |||||| ||||||||
Sbjct 373 GATGTGGCGATTAGGGTTGGGTAGCGACTCGTACCCTGAGAGACCAGGTGCTCCTGACTG 432
Query 181 TGCCTACTACATGCGAACTGGTGTCTGTGGTTACGGTAATAGATGTCGTTACAATCACCC 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 433 TGCCTACTACATGCGAACTGGTGTCTGTGGCTACGGTAATAGATGTCGTTACAATCACCC 492
Query 241 TCGCGATCGTGCCTCGGTTGAAGCAACTGTTAGAGCTACAGGGCAGTATCCAGAACGTTT 300
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 493 TCGCGATCGTGCCTCGGTTGAAGCAACTGTTAGAGCTACCGGGCAGTATCCTGAACGTTT 552
Query 301 AGGTGAACCCCCATGCCAGTTTTACTTGAAAACTGGAACCTGTAAATTTGGGGCGTCATG 360
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 553 TGGTGAACCCCCATGCCAGTTTTACTTGAAAACTGGAACTTGTAAATTTGGGGCGTCATG 612
Query 361 CAAATTCCACCATCCAAAGAATGCTGGTGGATCCATGACCCACGTTCCACTAAATATATA 420
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 613 CAAATTCCACCATCCAAAGAATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATA 672
Query 421 TGGATACCCAGTACGAGAGGGTGATAACGAATGCTCCTACTATTTGAAAACGGGGCAATG 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 TGGATACCCTGTACGAGAGGGTGATAACGAATGCTCCTACTATTTGAAAACGGGGCAATG 732
Query 481 CAAATTTGGTATAACCTGTAAATTTCATCATCCTCAGCCTGCTGGTACAACTGTCCCACC 540
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 733 CAAATTTGGTATAACCTGTAAATTTCATCATCCTCAGCCTGCTGGTACTACTGT--C-CC 789
Query 541 ACCACCACCAGCATCTGCACCTCAGTTTTATCCATCGGTGCAGTCACTTATGCCTGACCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 ACCACCACCAGCATCTGCACCTCAGTTTTATCCATCGGTGCAGTCACTTATGCCTGACCA 849
Query 601 GTATGGAGGTCCATCTTCTAGCTTGAGAGTTGCAAGAACTCTTCTTCCCGGTTCTTATAT 660
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 850 GTATGGAGGTCCATCTTCTAGCTTGAGAGTTGCAAGAACTCTTCTTCCTGGTTCTTATAT 909
Query 661 GCAAGGCGCCTATGGTCCAATGCTATTAACCCCCGGGGTCGTTCCTATTCCAGGCTGGAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 GCAAGGCGCCTATGGTCCAATGCTATTAACCCCCGGGGTCGTTCCTATTCCAGGCTGGAG 969
Query 721 TCCTTATTCGGCACCTGTGAGCCCTGCTCTATCTCCTGGTGCGCAGCACGCTGTTGGGGC 780
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TCCTTACTCGGCACCTGTGAGCCCTGCTCTATCTCCTGGTGCGCAGCACGCTGTTGGGGC 1029
Query 781 AACTTCTTTATATGGAGTTACACAGCTCTCTTCCACCACTCCTTCGCTTCCCGGGGTTTA 840
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1030 AACTTCTTTATATGGAGTTACACAGCTCACTTCCACCACTCCTTCGCTTCCCGGGGTTTA 1089
Query 841 TCCATCTCTGTCCTCTCCTACAGGTGTTATACAGAAAGAACAGGCCTTTCCAGAGAGACC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TCCATCTCTGTCCTCTCCTACAGGTGTTATACAGAAAGAACAGGCCTTTCCAGAGAGACC 1149
Query 901 TGGTGAACCAGAGTGCCAATACTATTTGAAAACAGGAGATTGTAAGTTTGGAACATCTTG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 TGGTGAACCAGAGTGCCAATACTATTTGAAAACAGGAGATTGTAAGTTTGGAACATCTTG 1209
Query 961 TAAGTTTCATCATCCTCGAGATCGGGTTCCACCAAGAGCTAATTGCATCCTCAGCCCCAT 1020
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1210 TAAGTTTCATCATCCTCGAGATCGGGTTCCACCAAGAGCGAATTGCGTCCTCAGCCCCAT 1269
Query 1021 TGGCCTTCCTCTACGCCCGGGTGTGCAACGCTGCACTTTCTACGTACAAAACGGCTTCTG 1080
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1270 TGGTCTTCCTCTACGCCCGGGTGTGCAACGGTGCACTTTCTACGTACAAAACGGCTTCTG 1329
Query 1081 TAAGTTTGGATCAACATGTAAATTTGATCATCCAATGGGAACCATCAGATACAATCCTTC 1140
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1330 TAAGTTTGGATCAACATGTAAGTTTGATCATCCAATGGGAACGATCAGATACAATCCTTC 1389
Query 1141 TGCATCGTCTCTAGCTGATGCACCGGTGGCTCCTTACCCAGTGAGCTCTCTCTTGGGTGC 1200
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 TGCGTCCTCTCTAGCTGATGCACCGGTGGCTCCTTACCCAGTGAGCTCTCTCTTGGGTGC 1449
Query 1201 TCTCGCAGCCGCACCTTCTTCTTCATCGACTGAGCTCATAACAGGCGGTGCAAAAGATCC 1260
||| ||||| || ||||||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct 1450 TCTGGCAGCTGCCCCTTCTTCTTCATCGACAGAGCTCATAGCAGGCGGTGCAAAAGATGC 1509
Query 1261 GTACTTGACCGGTGTGCCTACATCAAGAAGCACATCAAACATCTCGGCAGGTTTGATTTT 1320
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 TTACATGACCGGTGTGCCTACATCAAGAAGCACATCAAACATCTCGGCAGGTTTGATTTT 1569
Query 1321 CTCCCAGAGTGGTGGCTCAATTCCATTCTCTGACCTACAACTCTCGAGCCAGA-CATCTC 1379
||||||||| ||||| |||||||||||||| || || |||||||||||||||| | ||||
Sbjct 1570 CTCCCAGAGCGGTGGGTCAATTCCATTCTCAGAGCTGCAACTCTCGAGCCAGAGC-TCTC 1628
Query 1380 TTCCTCCAACAGGTAGCAGAATCACAAGACAAGGGCGAGAAATTCGTCGATCCTTTTGAA 1439
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1629 TTCCTCTAACAGGTAGCAGAATCACAAGACAAGGGCGTGAAATTCGTCGATCCTTTTGAA 1688
Query 1440 CT-GATCACCTCAGAAAAGGG 1459
| ||||||||||||||||||
Sbjct 1689 -TAGATCACCTCAGAAAAGGG 1708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71937380985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5