BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935792
Length=1883
Score E
Sequences producing significant alignments: (Bits) Value
AT2G48010.1 | Symbols: RKF3 | receptor-like kinase in in flower... 2894 0.0
> AT2G48010.1 | Symbols: RKF3 | receptor-like kinase in in flowers
3 | chr2:19641377-19643491 FORWARD LENGTH=2115
Length=2115
Score = 2894 bits (1567), Expect = 0.0
Identities = 1781/1883 (95%), Gaps = 20/1883 (1%)
Strand=Plus/Plus
Query 17 ATTAGATGCTGTTTCTCCGTGGAATCGCCGTCGTCCTCATTCTCTTCACCTCTTTCTCCG 76
|||||||| ||||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 84 ATTAGATGTTGTTTCTCCGTCGAATCGCCGTCGTCTTCTTTGTCTTCACCTCTTTCTCCG 143
Query 77 CCGCTCAGAACTCCACGTGTCCTCTGGACTTTTCCGTCCTCCAACCTTTCCGGCGTCCGA 136
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 144 CCGCTCAGAACTCCACGTGTCCTCTGGACTTTTCCGTCCTTGAACCGTTCCGGCGTCCGA 203
Query 137 AACCCGATGGCGCCACCACCTGCCAGTACCTCCTCCAAGGGCTACGCCTCCTTTACTCTC 196
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 204 AACCCGATGGCGCCACCACCTGCCAGTACCTCCTCCAAGGGCTACGCCTCCTCTACTCTC 263
Query 197 ACCATCTCCGTCAGACGGGTTCCTTTCTCCCGCCACCTGACTCTGCTCCCTCCTGCTGGG 256
|||||||||||||||||||||||||||||||||||||||| |||||| | || |||||||
Sbjct 264 ACCATCTCCGTCAGACGGGTTCCTTTCTCCCGCCACCTGAGTCTGCTGCTTCTTGCTGGG 323
Query 257 CTGCTCTCCAGTCTTCCATCGCCGGATTCCTCCCTCGCTTCGACGTCCGGTCCACCTGTG 316
||||||||||||||||| ||||||| |||||||||||||| |||||||| |||||||| |
Sbjct 324 CTGCTCTCCAGTCTTCCGTCGCCGGTTTCCTCCCTCGCTTTGACGTCCGATCCACCTGCG 383
Query 317 GTTTCCAGACGCCGTGGATTTCGCAGGGGTGCATGAACATCACCACCAGGTCTCAATTCG 376
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 384 GTTTCCAGACGCCGTGGATTTCGCAGGGGTGCATGGACATCACCACCAGGTCTCAATTCG 443
Query 377 AATCCCTAATCCCTAATTCCTCCCTCACCACCACCGCCATGCGCTGTAACACCTCTCTCG 436
||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 444 AATCCCTTATCCCTAACTCCTCCCTCGCCACCACCGCCATGCGCTGTAACACCTCTCTCG 503
Query 437 AGAGCAACACCCCTTGCGCCTCCTGCACTCAGAGCCTCTCCGCGTTTCAGCCCTTTCTCA 496
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 504 AGAGCAATACCCCTTGCGCCTCCTGCACTCAGAGCCTCTCCGCGTTTCAGCCCTATCTCT 563
Query 497 CCGGACCTTCCCTCGGCAACGTCTCCAACTGTGATTCTTTTCCCTCTGTCTACGCCGCTG 556
|||| || |||||||| || |||||| |||||| ||||||||||||| ||||||||||||
Sbjct 564 CCGGTCCATCCCTCGGTAATGTCTCCGACTGTGCTTCTTTTCCCTCTATCTACGCCGCTG 623
Query 557 CTTTCGCCAATTCCTACGGTCCCACCGACAAAGGCACCGCCAAATGCTTGTTTCAGCTCG 616
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 624 CTTTCGCCAATTCCTTGGGCCCCACCGACAAAGGCACCGCCAAATGCTTGTTTCAGCTCG 683
Query 617 ATTTGGCTTCT--C-CTAGCTCCGGTAATGGCAAACTCA-TCAAAATTCT--TGT-TTCT 669
||||||||||| | |||||||||| | || ||| | ||||| |||| | | ||||
Sbjct 684 ATTTGGCTTCTCCCACTAGCTCCGG---T-GCTAACAAAGTCAAAGTTCTAGTTTCTTCT 739
Query 670 TTATCTGTCTTGCTCGTTGCCTCTGCTCTGGTTACCACCGCTTGCTTCTGGTACTGCCGG 729
|| ||||| |||||||| ||||||| |||||||| ||||||||| |||||||||||||||
Sbjct 740 TTCTCTGTTTTGCTCGTCGCCTCTGTTCTGGTTATCACCGCTTGGTTCTGGTACTGCCGG 799
Query 730 AGG-A-AAAAG-AA------CAAGCCTCGGGATACCAGTTTAGAAGCTGGCACGCAATCT 780
||| | ||||| || ||||||||||||||| |||||||||||||||||||| |||
Sbjct 800 AGGAAGAAAAGCAAGCTTCTCAAGCCTCGGGATACTAGTTTAGAAGCTGGCACGCAGTCT 859
Query 781 AGACTTGATTCCATGAGCGAGAGCACCACTCTTGTCAAATTCAGCTTCGACGAGATCAAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 AGACTTGATTCCATGAGCGAGAGCACCACTCTTGTCAAATTCAGCTTCGACGAGATCAAG 919
Query 841 AAAGCCACCAACAATTTCTCGCGCCACAACATCATTGGCAGGGGAGGTTACGGGAACGTC 900
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 920 AAAGCCACCAACAATTTCTCACGCCACAACATCATTGGCCGGGGAGGTTACGGGAACGTC 979
Query 901 TTCAAGGGCGTCTTGCCCGACGGCACCCAGGTTGCCTTCAAGAGGTTCAAGAACTGTTCT 960
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TTCAAGGGCGCCCTGCCCGACGGCACCCAGGTTGCCTTCAAGAGGTTCAAGAACTGTTCT 1039
Query 961 GCTGGAGGGGACGCCAACTTCGCTCATGAGGTCGAGGTCATCGCCAGCATCCGCCACGTC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 GCTGGAGGGGACGCCAACTTCGCTCATGAGGTCGAGGTCATCGCCAGCATCCGCCACGTC 1099
Query 1021 AATCTCCTTGCCCTCAGAGGCTACTGTACAGCAACCACGCCCTATGAAGGTCACCAGAGG 1080
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1100 AATCTCCTTGCCCTCAGAGGCTACTGTACTGCAACCACGCCCTATGAAGGTCACCAGAGG 1159
Query 1081 ATCATAGTCTGTGATCTTGTCAGCAACGGTAGCCTTCATGACCATCTCTTTGGAGACTTG 1140
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1160 ATCATTGTCTGTGATCTTGTCAGTAACGGTAGCCTTCATGACCATCTCTTTGGCGACTTG 1219
Query 1141 GAGGCTCAGCTTCCCTGGCCTCTCAGGCAGAGGATCGCACTTGGCATGGCCAGAGGGCTG 1200
|||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 1220 GAGGCTCAGCTTGCCTGGCCTCTTAGGCAGAGGATCGCCCTTGGCATGGCCAGAGGACTG 1279
Query 1201 GCTTATCTACACTACGGCGCACAACCCTCCATCATCCACAGGGATATCAAGGCCAGCAAC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 GCTTATCTACACTACGGCGCACAACCCTCCATCATCCACAGGGATATCAAGGCCAGCAAC 1339
Query 1261 ATTCTCTTGGACGAGAGGTTTGAGGCCAAGGTTGCGGATTTCGGGCTGGCCAAGTTCAAC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 ATTCTCTTGGACGAGAGGTTTGAGGCCAAGGTTGCGGATTTCGGGCTGGCCAAGTTCAAC 1399
Query 1321 CCCGAAGGAATGACGCATATGAGCACGCGGGTCGCAGGCACAATGGGGTACGTGGCTCCA 1380
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1400 CCCGAAGGAATGACTCATATGAGCACGCGGGTCGCAGGCACTATGGGATACGTTGCTCCA 1459
Query 1381 GAGTACGCACTGTACGGGAAACTGACTGAGAAAAGCGACGTCTACAGCTTTGGGGTGGTG 1440
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1460 GAGTACGCACTGTACGGGCAACTGACTGAGAAAAGCGACGTGTACAGCTTTGGGGTGGTG 1519
Query 1441 CTTCTAGAGCTTCTGAGCAGGAGAAAGGCGATTGTGACAGACGAGGAGGGGCAGCCTGTG 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 CTTCTAGAGCTTCTGAGCAGGAGAAAGGCGATTGTGACAGACGAGGAGGGGCAGCCTGTG 1579
Query 1501 TCGGTGGCAGACTGGGCGTGGTCGCTGGTGAGGGAAGGCCAGACACTGGATGTGGTGGAG 1560
||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct 1580 TCGGTGGCAGACTGGGCGTGGTCGCTGGTAAGAGAAGGCCAGACATTGGATGTGGTGGAA 1639
Query 1561 GACGGGATGCCAGAGAAGGGACCCCCAGAGGTTCTGGAGAAGTATGTGCTGATAGCAGTG 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 GACGGGATGCCAGAGAAGGGACCCCCAGAGGTTCTGGAGAAGTATGTGCTGATAGCAGTG 1699
Query 1621 CTGTGCTCCCACCCTCAGCTCCACGCAAGGCCAACAATGGATCAAGTGGTGAAAATGCTG 1680
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700 CTGTGCTCTCACCCTCAGCTCCACGCAAGGCCAACAATGGATCAAGTGGTGAAAATGCTG 1759
Query 1681 GAGAGTAATGAGTTCACTGTTATATCCATACCTCAACGCCCAATCCCTCTGGTGGCTTGT 1740
||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1760 GAGAGCAATGAGTTCACTGTTATAGCCATACCTCAACGGCCAATCCCTCTGGTGGCTTGT 1819
Query 1741 AGGGAAGAGATTGACCGCTCTGTTAGTAGCAGCAGCGGCTCCGGAAAGCTCACTAGCCCC 1800
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 1820 AGGGAAGAGATTGACCGCTCTGTTAGTAGCAGCAGTGGCTCAGGGAAGCTCACTAGCCCC 1879
Query 1801 ACGGGATATCAGGCCTTCTCCTTCGGAGGTGATGGACCCTCAGGGAACACAAATACCACT 1860
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 1880 ACGGGATATCAGGCCTTCTCATTCGGAGGTGATGGCCCCTCAGGGAACACGAATACCACT 1939
Query 1861 TAGCTGAGAGATGTATGTTGTAG 1883
||| ||||| |||||||||||||
Sbjct 1940 TAGATGAGATATGTATGTTGTAG 1962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93222412065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5