BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936006

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 | c...   320    3e-87


> AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 | 
chr4:10082108-10087203 FORWARD LENGTH=3395
Length=3395

 Score =  320 bits (173),  Expect = 3e-87
 Identities = 190/198 (96%), Gaps = 2/198 (1%)
 Strand=Plus/Plus

Query  8     ACCGG-TGAATGATATGCCTTGGGATTATTGGAGTCGGTTACTTTTAACTGTTGATGGAT  66
             ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1511  ACCGGTTG-ATGATATGCCTTGGGATTATTGGAGTCGGTTACTTTTAACTGTTGATGGAT  1569

Query  67    GGCTGCTTGAAAAGAAAATTGCAAGCAACGAAGCTGACTTACTGAGAGACATGGTATGGA  126
             ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct  1570  GGCTGCTTGAAAAGAAAATAGCAAGCAACGATGCTGACTTACTGAGAGACATGGTATGGA  1629

Query  127   AGAAAGATAGAAGAATTCATGATACGTATCTCGACGTCAAAGATAAGAATGAACGTGATG  186
             |||||||| |||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct  1630  AGAAAGATCGAAGAATTCATGATACCTATATTGACGTCAAAGATAAGAATGAACGTGATG  1689

Query  187   CCATCTCTGCATTTCTCA  204
             ||||||||||||||||||
Sbjct  1690  CCATCTCTGCATTTCTCA  1707



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11209708027


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5