BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg936006 Length=247 Score E Sequences producing significant alignments: (Bits) Value AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 | c... 320 3e-87 > AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 | chr4:10082108-10087203 FORWARD LENGTH=3395 Length=3395 Score = 320 bits (173), Expect = 3e-87 Identities = 190/198 (96%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 8 ACCGG-TGAATGATATGCCTTGGGATTATTGGAGTCGGTTACTTTTAACTGTTGATGGAT 66 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1511 ACCGGTTG-ATGATATGCCTTGGGATTATTGGAGTCGGTTACTTTTAACTGTTGATGGAT 1569 Query 67 GGCTGCTTGAAAAGAAAATTGCAAGCAACGAAGCTGACTTACTGAGAGACATGGTATGGA 126 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1570 GGCTGCTTGAAAAGAAAATAGCAAGCAACGATGCTGACTTACTGAGAGACATGGTATGGA 1629 Query 127 AGAAAGATAGAAGAATTCATGATACGTATCTCGACGTCAAAGATAAGAATGAACGTGATG 186 |||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||| Sbjct 1630 AGAAAGATCGAAGAATTCATGATACCTATATTGACGTCAAAGATAAGAATGAACGTGATG 1689 Query 187 CCATCTCTGCATTTCTCA 204 |||||||||||||||||| Sbjct 1690 CCATCTCTGCATTTCTCA 1707 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11209708027 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5