BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936137
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03440.1 | Symbols: NRP1, ATNRP1 | nodulin-related protein 1... 582 1e-165
> AT2G03440.1 | Symbols: NRP1, ATNRP1 | nodulin-related protein
1 | chr2:1039205-1040118 REVERSE LENGTH=914
Length=914
Score = 582 bits (315), Expect = 1e-165
Identities = 434/488 (89%), Gaps = 21/488 (4%)
Strand=Plus/Plus
Query 103 caacaa-aaacaaacccggtcaaaccgattcaacaacacataaaccggtttccaacaCCG 161
|||||| | | ||||||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct 253 CAACAACACATAAACCCGGTCACGGCGAGCCAACAACACATAAACCGGTCTCCAACACCG 312
Query 162 AT-CAATCAACACATAGGCCAGCTTCGAACGCCGAGCTCATGGCTAGTGCCAAGATCGTA 220
|| ||| ||||||| || || ||| ||||||| |||||||||||||||||||||||||||
Sbjct 313 ATCCAA-CAACACACAGACCGGCTACGAACGCTGAGCTCATGGCTAGTGCCAAGATCGTA 371
Query 221 GCCGAAGCTGCTCAAGCCGCTGCTCGTAACGAGTCAGACAAGCTTGACAAAGCTAAAGTC 280
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 372 GCCGAAGCTGCTCAAGCCGCTGCTCGTCACGAGTCAGACAAGCTTGACAAAGCCAAAGTC 431
Query 281 GCCGGAGCCGCCGCTGACATCTTAGACGCCGCTTCTAGATACGGTAAGCTCGATGAAAAG 340
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 GCCGGAGCCACCGCTGATATCTTAGACGCCGCTTCTAGATACGGTAAGCTCGATGAAAAG 491
Query 341 AGCGGTGTTGGTCAGTACCTCGAAAAGGCTGAACAATATCTCCACAAGTACGAAACTTCC 400
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 492 AGCGGTGTTGGTCAGTACCTTGAAAAGGCTGAACAATATCTTCACAAGTACGAAACTTCC 551
Query 401 CAGTCTCAGTCCTCCACCGGTGGAAGCCACGGTAGCCAAGGCGGTATTGGCAGCGGTGGA 460
|| ||||| |||||||||||||||| | || ||||| ||||| || | | |||
Sbjct 552 CACTCTCACTCCTCCACCGGTGGAA-CT--GGAAGCCA---CGGTAATGTT-G-GA-GGA 602
Query 461 AGCCATGGTGGTGTCAGCGGTGGAGCACCGGCGGCTAAGAAAGAAGATCAGAAGAAGTCC 520
| | ||||||| ||| |||||||||||||||||||||||||||| || |||||||
Sbjct 603 --C-ACGGTGGTGG-AGC--TGGAGCACCGGCGGCTAAGAAAGAAGAT--GA-GAAGTCC 653
Query 521 GGAGGTGGGCGTGGCTTTGGAGATTATGCTAAGATGGCTCAAGGTTTTATGAAGTGATTA 580
|||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 654 GGAGGTGGTCATGGGTTTGGAGATTATGCTAAGATGGCTCAAGGTTTTATGAAGTGAGTA 713
Query 581 ATGTTTTA 588
||||||||
Sbjct 714 ATGTTTTA 721
Score = 219 bits (118), Expect = 3e-56
Identities = 139/149 (93%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 3 TTTTTCTTTGAGACaaaaaaaaCATGGATTTCTTCACCGATCAAGTAAAGAAGAAATTCT 62
|||| |||||| || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 125 TTTTCCTTTGAAAC-AAAGAAACATGGATTTCTTCACCGATCAAGTAAAGAAGAAATTCT 183
Query 63 CGGACAAGAAACCGGAGAGCTCTGATCCGGAGCcaaaccacaacaaaaacaaacccggtc 122
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CCGACAAGAAACCGGAGAGCTCTGATCCGGAGCCAAACCACAACAAAAACAAACCCGGTC 243
Query 123 aaaccgattcaacaacacataaacc-ggt 150
| || || |||||||||||||||| |||
Sbjct 244 ACACGGAGCCAACAACACATAAACCCGGT 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28733932084
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5