BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936169
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03730.1 | Symbols: ACR5 | ACT domain repeat 5 | chr2:113763... 2191 0.0
> AT2G03730.1 | Symbols: ACR5 | ACT domain repeat 5 | chr2:1137635-1140186
REVERSE LENGTH=1800
Length=1800
Score = 2191 bits (1186), Expect = 0.0
Identities = 1327/1397 (95%), Gaps = 2/1397 (0%)
Strand=Plus/Plus
Query 15 AATCGAGAATGGATGTTTGCTTGAGCTATTCATATAATATGGATGATGAGATTGCGAAAT 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 237 AATCGAGAATGGATGTTTGCTTGAGCTATTCATATAATATGGATGATGAGATTGCTAAGT 296
Query 75 TCATCAGAAGAGTGAATCCACCAAGGGTTGTGATCGATAACGAAGTCTGCAAAGATGTCA 134
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 297 TCATCAGAAGAGTGAATCCACCAAGGGTTGTGATCGATAACGAAGTCTGCAAAGATGTTA 356
Query 135 CTGTTATTAAGGTGGATAGTGCGAATAAACATGGAATACTTCTGGAAGTTGTTCAAGTTT 194
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 357 CTGTCATTAAGGTGGATAGTGCGAATAAACATGGGATACTTCTGGAGGTTGTTCAAGTTT 416
Query 195 TGACTGAGCTTAATCTCACTATTAAGAAAGCTTATATCTCCTCTGATGGTGGTTGGTTTA 254
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 417 TGACTGAGCTTAATCTGACTATTAAGAAAGCTTATATCTCCTCTGATGGTGGCTGGTTTA 476
Query 255 TGGATGTTTTCAATGTTACTGATCAAGATGGGAACAAAGTTACTGATGAAATCGTTCTTG 314
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 477 TGGATGTTTTCAATGTTACTGATCAAGATGGGAACAAAGTTACCGATGAAATTGTTCTTG 536
Query 315 ATTATATCCGTAAAACTCTTGGTCCTGATGAGTCTTCTTGCTTCAGTCCATCGATGAGAT 374
| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 537 AATATATCCGTAAATCTCTTGGTCCTGATGAGTCTTCTTGCTTCAGTCCATCAATGAGAT 596
Query 375 CAACTATTGGTGTTAAACAATCTGTCGACTACACTGTGATTGAGCTAACAGGAACTGACA 434
|||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 597 CAACCATTGGGGTTAAACAATCTGTCGACTACACTGTGGTTGAGCTAACAGGAACTGATA 656
Query 435 GACCTGGTTTGTTATCTGAGCTATGTGCTGTTCTTATGGACCTCCAATGTAATGTGGTAA 494
|||| |||||||| |||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 657 GACCCGGTTTGTTGTCTGAGTTATGTGCTGTTCTTATGGACCTCCAATGCAATGTGGTAA 716
Query 495 ACGCTGAAATTTGGACGCATAGAGCAAAGGCAGCAGCGGTTTTGCAAGTAACCGACGAAG 554
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 717 ACGCTGAAATTTGGACACATAGAGCAAAAGCAGCAGCGGTTTTGCAAGTGACCGATGAAG 776
Query 555 AAACCTGCTCTGCAATCACTGATCCAGAGAGGTTATCCAAAATCAGGAAACTTCTTGGTT 614
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 777 AAACGTGCTCTGCAATCACTGATCCAGAGAGGTTGTCCAAAATCAGGAAACTTCTTGGTT 836
Query 615 ATGTGCTTACAGGTGGAAGCAGTGGCAGAAGATTCCGTGAACCGAAGACCACGGTTTCTT 674
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 837 ATGTGCTTACAGGTGGAAGCAGTGGCAGAAGATTCCGTGAACCGAAAACCACTGTTTCTT 896
Query 675 CTGCTCTTGATGACACTCACACGGACCGTAAGCTTCATCAATTGATGTTTGCTGATAGAG 734
|||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 897 CTGCTCTTAATGAGACTCACACGGACCGTAAGCTTCATCAATTGATGTTTGCAGATAGAG 956
Query 735 ATTACGATGAATGGGAGAATAATGTTGATGATGAGGATAAATGTGGGAGAGTAGTTCCAG 794
|||| |||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 957 ATTATGATGAATGGGAGAACAATGTCGATGACGAGGATAAATGTGGGAGAGTAATTCCAG 1016
Query 795 ATGTGGATGTCTCCAATTTGCATGATTTGGATTACTCAATTGTGATGATCAAGTGTAAAG 854
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1017 ATGTGGATGTCTCCAATTTGCATGATTTGGATTACTCCATTGTGATGATCAAGTGTAAAG 1076
Query 855 ATAGACCAAAGCTTCTTTTCGATACCGTCTTCACTTTGACGGATATGAAATATGTGGTTT 914
| ||||| ||||||||||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct 1077 ACAGACCGAAGCTTCTTTTCGATACCGTCTTCACTCTGACAGATATGAATTATGTCGTTT 1136
Query 915 CACATGCCAGCATTGATGCTGAAGGCCCGGAAGCTTATCAGGAGTACTACATTAGACATA 974
||||||| |||||||| ||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 1137 CACATGCTAGCATTGACGCTGAAGGCCCCCAAGCTTATCAGGAATACTACATAAGACATA 1196
Query 975 CGGATGGATCTCCAGTAAAATCCGAGGCAGAAAGACAGCGAGTGATCAAATGTCTAAAAG 1034
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CGGATGGATCTCCTGTCAAATCCGAGGCAGAAAGACAGCGAGTGATCAAATGTCTAAAAG 1256
Query 1035 CAGCTATCCAAAGAAGAGTCTCTGAGGGGTTGAAACTTGAGCTTTGCACTTCAGATAGAG 1094
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1257 CAGCTATTCAAAGAAGAGTCTCTGAGGGGTTGAAGCTTGAGCTTTGCACTTCAGATAGAG 1316
Query 1095 TCGGGTTACTCTCGGATGTGACTCGTATTTTCCGTGAAAACAGTCTTACAGTAACAAGAG 1154
||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||
Sbjct 1317 TCGGGTTACTCTCGGATGTGACTCGAATCTTCCGCGAAAACAGTCTCACAGTAACAAGAG 1376
Query 1155 CTGAAGTGAAAACAAAAGGAGACAAAGCTCTTAACACATTCTATGTGAGGGACGCTTCTG 1214
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1377 CTGAAGTGAAAACAAAAGGAGACAAAGCTCTTAACACATTCTACGTGAGGGACGCTTCTG 1436
Query 1215 GCTACCAAGTTGATGCCAAGACCATAGAATCCATTAGACAAGTAATTGGTCAAACAATAC 1274
|||||||||||||| |||||||||||||||||||||||||||| || ||||| || ||||
Sbjct 1437 GCTACCAAGTTGATACCAAGACCATAGAATCCATTAGACAAGTCATCGGTCAGACGATAC 1496
Query 1275 TTCAAGTGAAAGGCGGAAACACAGACGC-ACAACCGAGTCCTCAAGATTCACCAACAGGA 1333
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1497 TTCAAGTGAAAGGCGGAAACACAGACGCGA-AACCGAGTCCTCAAGATTCACCAACAGGG 1555
Query 1334 TTTCTTTTCGGGGTTTTCAAGTCGAGATCTTTCGTCAATTTCGGGTTGATCAGATCTTAA 1393
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1556 TTTCTTTTCGGGGTTTTCAAGTCGAGATCTTTCGTCAATTTCGGGTTGATAAGATCTTAA 1615
Query 1394 ATCTTGAAAGAAGTGTT 1410
| ||||||||| |||||
Sbjct 1616 AACTTGAAAGAGGTGTT 1632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628155915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5