BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936430
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27050.1 | Symbols: | unknown protein; Has 43 Blast hits to... 981 0.0
> AT3G27050.1 | Symbols: | unknown protein; Has 43 Blast hits
to 43 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes
- 3 (source: NCBI BLink). | chr3:9978095-9979699 REVERSE
LENGTH=803
Length=803
Score = 981 bits (531), Expect = 0.0
Identities = 571/590 (97%), Gaps = 3/590 (1%)
Strand=Plus/Plus
Query 2 AGA-TTGtttttttGGGGCAATGGCGTTGTCGCTACAAAGCTCTGGGATGTTGACGAAAG 60
||| || |||||||||||||||||||| |||||| |||||||| ||||||||||||||||
Sbjct 44 AGAGTTTTTTTTTTGGGGCAATGGCGTCGTCGCTGCAAAGCTCGGGGATGTTGACGAAAG 103
Query 61 AGCAAATGGTTTATCTATTTGATAGATTCGATTACTTGACTTCACAGTCTGATGTGAAGA 120
|||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||
Sbjct 104 AGCAAATGGTTTATCTCTTTGATCGATTCGATTACTTGACTTCACAATCTGATGTGAAGA 163
Query 121 AACGAATCTCCGACGCTGTGGAGGATAAACAGGAAGCTGTAGCGGTAACAACTGCGATTC 180
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 164 AACGAATCTCCGACGCTGTGGATGACAAACAGGAAGCTGTAGCGGTAACAACTGCTATTC 223
Query 181 AAGAGGAGATATTCTTGGAGATGGGGATTGACCCGGGATTTGGTATTGGCTGCTTGGGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 AAGAGGAGATATTCTTGGAGATGGGGATTGACCCGGGATTTGGTATTGGCTGCTTGGGAA 283
Query 241 AGCTGAACTCTGCATACGAAAACGATAAAGAGTTGATGATTGGTTTCTACAAGTTTCTCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 AGCTGAACTCTGCATACGAAAACGATAAAGAGTTGATGATTGGTTTCTACAAGTTTCTCG 343
Query 301 CAAAGGAGGAGATGGCATGTGAAGAAGCTGAGCTTGGACCAGATGGATTTGAACAGAAAA 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 344 CAAAGGAGGAGATGGCATGTGAAGAAGCTGAGCTTGGACAAGATGGATTTGAACAGAAAA 403
Query 361 TGAAAGCACAACAACAATTACAAGAACAGCAACTAGAGATGCTTAAGTATATGCGTAAAT 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 TGAAAGCACTACAACAATTACAAGAACAGCAACTAGAGATGCTTAAGTATATGCGTAAAT 463
Query 421 TCTCTCTGGATGATCAATCTGCTATCCTTCAAAAGCTTCAGAAGCAATTAGAAAATGCGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 TCTCTCTGGATGATCAATCTGCTATCCTTCAAAAGCTTCAGAAGCAATTAGAAAATGCGG 523
Query 481 GTTTTGAGCCGGAGGCGTCGCTGTTGTCAGGAGAGGAAATGGAGGAAGCTGGAAGAAGAA 540
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 524 GTTTTGAGCCGGAGGCGTCTCTTTTGTCAGGAGAGGAAATGGAGGAAGCTGGAAGAAGAA 583
Query 541 GAGTTTCGCCTGTTTTTGGAAGCAGATAGCTTCTC-GATTCTCACAAGCT 589
||||||| |||||||||||||||||||||||| || | ||||||||||||
Sbjct 584 GAGTTTCACCTGTTTTTGGAAGCAGATAGCTTTTCAG-TTCTCACAAGCT 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5