BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936467
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27310.1 | Symbols: PUX1 | plant UBX domain-containing prote... 1260 0.0
> AT3G27310.1 | Symbols: PUX1 | plant UBX domain-containing protein
1 | chr3:10087201-10089101 REVERSE LENGTH=939
Length=939
Score = 1260 bits (682), Expect = 0.0
Identities = 751/785 (96%), Gaps = 2/785 (0%)
Strand=Plus/Plus
Query 13 CGGGTCTGATGTTTGTTGATGACCCTTCTCTTCACACCTTGAAACGGAGACGACTCGAGA 72
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 17 CGGGTCTGATGTTTGTTGATGACCCTTCTCTACACACCTTGAAACGCAGACGACTCGAGA 76
Query 73 TCATCGATTCCATGGAAGCTTCTTCTTCAGCTCAGGCTAAAATTGCTGATATGCGAGAGA 132
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TCACCGATTCCATGGAAGCTTCTTCTTCAGCTCAGGCTAAAATTGCTGATATGCGAGAGA 136
Query 133 AATTAGGGCGAGAGGTTCGTGTTTTCGAGACTTCGAGTAACTCTCAGAGGCCAAGTCAAG 192
||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 137 AATTAGGGCGAGAGGTTCGTGTTTTCGAGACTTCGAGTATCTCACAGAGACCAAGTCAAG 196
Query 193 TTTCTAGTGCTGAAGATGAATCTGATGATTTCTACGAGTTCACACCTGCAGATTATTACC 252
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 197 TTTCTAGTGCTGACGATGAATCTGATGATTTCTACGAGTTCACACCTGCAGATTTTTACC 256
Query 253 GCCTTTTAGCTACTAAGAAAGAAGATAAATCGTTGAAGACAAGAAAACTCCGGGAAGCAG 312
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 257 GCCTTTTGGCTACTAAGAAAGAAGATAAATCGTTGAAGACAAGAAAAATCCGGGAAGCAG 316
Query 313 AAGAAGCTGCTCGTCGATCAAAGCTGACTAAGGCTGTAATCCGGGTTCGTTTTCCTGATA 372
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 317 AAGAAGCTGCTCGTCGATCAAAGCTCACTAAGGCTGTAATCCGGGTTCGTTTTCCTGATA 376
Query 373 ATCACACATTGGAGGCAACATTTCATCCCTCAGAAAAGATCCAAGGCTTGATTGATCTTG 432
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 377 ATCACACATTGGAGGCAACATTTCATCCATCAGAAAAGATCCAAGGCTTGATTGATCTTG 436
Query 433 TCAGAAGAGTAGTTGCCCACCCAGATGTTCCTTTCTACTTGTACACAACTCCTCCCAAGA 492
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 437 TCAAAAGAGTAGTTGCCCACCCAGATGTTCCTTTCTACTTGTATACAACTCCTCCCAAGA 496
Query 493 AGCAGATAAAAGATTTCTCACAAGACTTCTACTCAGCTGGGTTTGTTCCTGGAGCAATTG 552
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 497 AACAGATAAAAGATTTCTCACAAGACTTCTACTCAGCTGGGTTTGTTCCTGGAGCCATTG 556
Query 553 TCTACTTTGCAAACGATCAACCTAAAGATGATGGTGCG-AGTTCAACTCCTTATCTTAAT 611
|||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 557 TCTACTTTTCAAACGATCAACCTAAAGATGATGGTG-GTAGTTCAACTCCTTATCTTAAT 615
Query 612 GAAGAGATCTTGTCACTGAAAGATTTAGAGGTCATGACCAAAGCGGAGGAACCGGTTGAT 671
|||||||| |||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 616 GAAGAGATTTTGTCACTGAAAGATTTAGAGGCCATGACCAAAGCCGTGGAACCGGTTGAA 675
Query 672 TCGTCTTCAGAGCCAGCCACTGTTGACTCTGGTTCTGTACCTGTTGAACACGAGCCTAAA 731
||||| |||||||||||||| ||||||||| || ||||||||||||||||||||| ||||
Sbjct 676 TCGTCATCAGAGCCAGCCACGGTTGACTCTAGTGCTGTACCTGTTGAACACGAGCGTAAA 735
Query 732 ACCACAGAGAAGAAGACCACAAAGCCTAAGTGGTTTAAAATGTGATTTCACTGCGTTACC 791
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 736 TCCACAGAGAAGAAGACCACAAAGCCTAAGTGGTTTAAAATGTGATTTCACTTTGTTTCT 795
Query 792 CACAT 796
|||||
Sbjct 796 CACAT 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38730527337
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5