BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg936489 Length=881 Score E Sequences producing significant alignments: (Bits) Value AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 | c... 1428 0.0 AT5G40650.1 | Symbols: SDH2-2 | succinate dehydrogenase 2-2 | c... 959 0.0 > AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 | chr3:10129610-10132760 REVERSE LENGTH=2424 Length=2424 Score = 1428 bits (773), Expect = 0.0 Identities = 846/881 (96%), Gaps = 6/881 (1%) Strand=Plus/Plus Query 1 GATTTCTCCGAGAGaaaaaaaaTGGCGTCTGGTTTGATCGGAAGATTGGTTGGAACGAAA 60 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69 GATTTCTCCGAG-G-AAAAAAATGGCGTCTGGTTTGATCGGAAGATTGGTTGGAACGAAA 126 Query 61 CCGTCGAAATTAGCCACGGCGGTGCGGTTAATTCCGGCGAGATGGACCTCTACGGGAGCG 120 |||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| Sbjct 127 CCGTCGAAATTAGCCACGGCGGCGAGGTTAATTCCGGCGAGATGGACCTCTACAGGAGCG 186 Query 121 GAGGCGGAAACAAAAGCTTCGTCTGGCGGCGGAAGAGGATCGAACTTGAAGACTTTTCAG 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 187 GAGGCGGAAACAAAAGCTTCCTCTGGCGGCGGAAGAGGATCGAACTTGAAGACTTTTCAG 246 Query 181 ATCTATCGATGGAATCCAGATAATCCAGGGAAGCCAGAGCTT-AAAGATTACCAGGTCGA 239 |||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| Sbjct 247 ATCTATCGATGGAATCCAGATAATCCAGGGAAGCCAGAGCTTCAAA-ATTACCAGATCGA 305 Query 240 TCTCAAGGATTGTGGTCCAATGGTTTTAGATGCTTTGATTAAGATCAAAAACGAAATGGA 299 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 306 TCTCAAAGATTGTGGTCCAATGGTATTAGATGCTTTGATTAAGATCAAAAACGAAATGGA 365 Query 300 TCCATCGCTTACCTTCCGTAGATCGTGCCGTGAAGGGATCTGTGGTTCATGTGCTATGAA 359 |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 366 TCCATCTCTTACTTTCCGTAGATCATGCCGTGAAGGGATCTGTGGTTCATGTGCTATGAA 425 Query 360 CATTGATGGATGTAATGGACTTGCTTGTTTAACGAAGATTCAAGATGGAGCATCGGGGAC 419 ||||||||||||||| |||||||||||||| || ||||||||||||| |||||||| ||| Sbjct 426 CATTGATGGATGTAACGGACTTGCTTGTTTGACAAAGATTCAAGATGAAGCATCGGAGAC 485 Query 420 GACGATTACACCGTTGCCTCATATGTTTGTGATTAAGGATCTT-GTGGTTGATATGACTA 478 |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| Sbjct 486 GACGATTACACCGTTGCCTCATATGTTTGTGATTAAGGAT-TTGGTTGTTGATATGACTA 544 Query 479 ATTTTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCATCTG 538 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 545 ATTTTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCGTCTG 604 Query 539 TTCCTGCTAAGGAGATTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATG 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 TTCCTGCTAAGGAGATTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATG 664 Query 599 AGTGTATTCTTTGTGCTTGTTGTAGCACATCTTGTCCTAGTTACTGGTGGAATCCTGAGT 658 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 665 AATGTATTCTTTGTGCTTGTTGTAGCACATCTTGTCCTAGTTACTGGTGGAATCCTGAGT 724 Query 659 CTTACCTTGGTCCAGCTGCTTTGCTACATGCTAATAGGTGGATAAGTGATAGTCGTGATG 718 |||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| Sbjct 725 CTTACCTTGGTCCAGCTGCTTTGCTACACGCTAATAGGTGGATAAGCGACAGTCGTGATG 784 Query 719 AGTACACTAAGGAAAGACTTGAAGCTGTTGATGACGAGTTCAAGCTTTACCGTTGCCATA 778 |||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| Sbjct 785 AGTACACTAAGGAAAGACTTGAGGCTATTGACGACGAGTTCAAGCTTTACCGTTGCCATA 844 Query 779 CAATCTTGAACTGTGCTCGTGCCTGTCCAAAGGGTTTGAACCCAGGAAAACAGATCGCAC 838 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 845 CAATCTTGAATTGTGCTCGTGCCTGTCCAAAGGGTTTGAACCCAGGAAAACAGATTACTC 904 Query 839 ACATCAAGCAACTTCAACGTTGAAACAGCTAAGTTTGTGTG 879 |||||||||||||||| |||||||||||||||||||||||| Sbjct 905 ACATCAAGCAACTTCAGCGTTGAAACAGCTAAGTTTGTGTG 945 > AT5G40650.1 | Symbols: SDH2-2 | succinate dehydrogenase 2-2 | chr5:16281404-16283527 FORWARD LENGTH=1132 Length=1132 Score = 959 bits (519), Expect = 0.0 Identities = 737/842 (88%), Gaps = 15/842 (2%) Strand=Plus/Plus Query 19 aaaaTGGCGTCTGGTTTGATCGGAAGA-TTGGTTGGAACGAAACCGTCGA-AATTAGCCA 76 |||||||||| |||||||||||||||| || |||||||| ||| | || | |||| ||| Sbjct 56 AAAATGGCGTTTGGTTTGATCGGAAGAGTT-GTTGGAACCAAATCATC-ACGATTATCCA 113 Query 77 CGGCGGTGCGGTTAATTCCGGCGAGATGGACCTCTACGGGAGCGGAGGCGGAAACAAAAG 136 |||||| ||| || ||||||||| ||||||| || || ||| | || || || | |||| Sbjct 114 CGGCGGCGCGATTGATTCCGGCGCGATGGACATCAACAGGATCAGAAGCACAATCGAAAG 173 Query 137 CTTCGTCTGGCGGCGGAAGAGGATCGAACT-TGAAGACTTTTCAGATCTATCGATGGAAT 195 |||| | |||||| | ||||| || | | ||||||| ||||||||||||||||||||| Sbjct 174 CTTCAACCGGCGGC-G--GAGGAGCG-AGTCTGAAGACGTTTCAGATCTATCGATGGAAT 229 Query 196 CCAGATAATCCAGGGAAGCCAGAGCTTAAAGATTACCAGGTCGATCTCAAGGATTGTGGT 255 ||||||||||| || |||||||||||| |||||||| | |||||||||||||||||||| Sbjct 230 CCAGATAATCCTGGAAAGCCAGAGCTTCAAGATTACAAAATCGATCTCAAGGATTGTGGT 289 Query 256 CCAATGGTTTTAGATGCTTTGATTAAGATCAAAAACGAAATGGATCCATCGCTTACCTTC 315 ||||||||| ||||||||||||||||||| || ||||| |||||||||||||| || ||| Sbjct 290 CCAATGGTTCTAGATGCTTTGATTAAGATTAAGAACGAGATGGATCCATCGCTCACTTTC 349 Query 316 CGTAGATCGTGCCGTGAAGGGATCTGTGGTTCATGTGCTATGAACATTGATGGATGTAAT 375 ||| | || ||||||||||| || |||||||| ||||||||||||||||||||||||||| Sbjct 350 CGTCGCTCTTGCCGTGAAGGTATTTGTGGTTCGTGTGCTATGAACATTGATGGATGTAAT 409 Query 376 GGACTTGCTTGTTTAACGAAGATTCAAGATGGAGC-ATCGGGGACGACGATTACACCGTT 434 || ||||||||||||||||||||| || |||| | | | | ||||||||||| ||||| Sbjct 410 GGTCTTGCTTGTTTAACGAAGATTGAATCTGGATCTAAAGAG-ACGACGATTACGCCGTT 468 Query 435 GCCTCATATGTTTGTGATTAAGGATCTTG-TGGTTGATATGACTAATTTTTATAATCAGT 493 ||| ||||||||||||||||||||| ||| | || |||||||| |||||||||||||||| Sbjct 469 GCCGCATATGTTTGTGATTAAGGAT-TTGGTTGTGGATATGACGAATTTTTATAATCAGT 527 Query 494 ATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCATCTGTTCCTGCTAAGGAGA 553 ||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| Sbjct 528 ATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGAATCCAGCATCTGTTCCTGGGAAAGAGA 587 Query 554 TTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATGAGTGTATTCTTTGTG 613 |||| ||||||||||| |||||||||||||||||||| |||||||| |||||||| |||| Sbjct 588 TTTTACAGAGTAAGAAAGATAGAGCTAAGCTTGATGGAATGTATGAATGTATTCTCTGTG 647 Query 614 CTTGTTGTAGCACATCTTGTCCTAGTTACTGGTGGAATCCTGAGTCTTACCTTGGTCCAG 673 ||||||||||||| ||||| ||||| || |||||||| ||||||||||| |||||||||| Sbjct 648 CTTGTTGTAGCACGTCTTGCCCTAGCTATTGGTGGAACCCTGAGTCTTATCTTGGTCCAG 707 Query 674 CTGCTTTGCTACATGCTAATAGGTGGATAAGTGATAGTCGTGATGAGTACACTAAGGAAA 733 |||||||||| ||||| || ||||||||||||||||| || ||||||||||||||||||| Sbjct 708 CTGCTTTGCTTCATGCCAACAGGTGGATAAGTGATAGCCGAGATGAGTACACTAAGGAAA 767 Query 734 GACTTGAAGCTGTTGATGACGAGTTCAAGCTTTACCGTTGCCATACAAT-CTTGAACTGT 792 |||||||||| |||| || |||||||| || || || ||||| ||||| || ||||||| Sbjct 768 GACTTGAAGCCATTGACGATGAGTTCAAACTGTATCGATGCCACACAATTCT-GAACTGT 826 Query 793 GCTCGTGCCTGTCCAAAGGGTTTGAACCCAGGAAAACAGATCGCACACATCAAGCAACTT 852 |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||| Sbjct 827 GCTCGTGCCTGTCCAAAGGGATTGAACCCAGGGAAACAGATCACACACATCAAGCAGCTT 886 Query 853 CA 854 || Sbjct 887 CA 888 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43000429832 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5