BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936501
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27430.2 | Symbols: PBB1 | N-terminal nucleophile aminohydro... 1415 0.0
AT5G40580.1 | Symbols: PBB2 | 20S proteasome beta subunit PBB2 ... 1016 0.0
> AT3G27430.2 | Symbols: PBB1 | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr3:10152517-10155342
FORWARD LENGTH=1230
Length=1230
Score = 1415 bits (766), Expect = 0.0
Identities = 821/848 (97%), Gaps = 2/848 (0%)
Strand=Plus/Plus
Query 7 GTCAATTTGAAAAAATGTCGCAATCAGCCGTAGATGTTCCGCCAAAGGGTGGGTTTAGCT 66
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 105 GTCAATTTGAAAAAATGTCGCAATCAACCGTAGATGTTCCGCCAAAGGGTGGGTTTAGCT 164
Query 67 TCGATCTGTGTAAGAGAAATGATATGCTTACACAAAAGGGTCTTAAAGCTCCGTCTTTTT 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 TCGATCTGTGTAAGAGAAATGATATGCTTACACAAAAGGGTCTTAAAGCTCCGTCTTTTT 224
Query 127 TGAAGACTGGAACAACCATCGTTGGTTTGATTTTCAAGGATGGTGTGATACTAGGGGCGG 186
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 225 TGAAGACTGGAACAACCATTGTTGGTTTGATTTTCAAGGATGGTGTGATACTAGGGGCAG 284
Query 187 ATACCCGAGCAACTGAGGGGCCAATTGTTGCTGATAAGAACTGTGAGAAGATTCACTATA 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 ATACCCGAGCAACTGAGGGGCCAATTGTTGCTGATAAGAACTGTGAGAAGATTCACTATA 344
Query 247 TGGCACCAAACATTTATTGCTGTGGTGCAGGAACTGCGGCCGACACTGAAGCAGTCACTG 306
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 345 TGGCACCAAACATATATTGCTGTGGTGCAGGAACTGCGGCTGATACTGAAGCAGTCACTG 404
Query 307 ATATGGTCAGCTCACAGCTGCGGTTGCATCGTTACCAGACTGGTCGTGACTCTCGGGTCA 366
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 405 ATATGGTCAGCTCACAGCTGCGATTGCATCGTTACCAGACTGGTCGAGACTCTCGGGTCA 464
Query 367 TTACTGCTTTGACCCTTCTCAAAAAACATCTATTCAGCTATCAAGGTCATGTCTCTGCTG 426
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 465 TTACTGCTTTGACCCTTCTCAAAAAACATCTTTTCAGCTACCAAGGTCATGTCTCTGCTG 524
Query 427 CTCTTGTGCTCGGTGGAGTTGATATCACTGGCCCTCATCTGCATACTATATACCCACACG 486
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 525 CTCTTGTACTCGGTGGAGTTGATATCACTGGTCCACATCTGCATACTATATACCCACACG 584
Query 487 GTTCAACTGACACTCTTCCATTCGCTACAATGGGTTCTGGTTCTCTTGCTGCTATGTCTG 546
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 585 GTTCAACTGACACTCTTCCATTCGCCACAATGGGTTCGGGTTCTCTTGCTGCTATGTCTG 644
Query 547 TGTTTGAGGCAAAGTATAAAGAAGGGCTAACTAGGGATGAAGGAATTAAGCTGGTCGCTG 606
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 645 TGTTTGAGGCAAAGTATAAAGAAGGCCTAACTAGGGATGAAGGAATTAAGCTGGTCGCTG 704
Query 607 AAGCCATATGCTCGGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTGGACATCTGCG 666
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 AATCCATATGCTCGGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTGGACATCTGCG 764
Query 667 TGATCACTAAGGGGAACAAAGAATATCTGAGGAACTACATGGAACCAAACCCAAGAACCT 726
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 765 TGATCACAAAGGGGAACAAGGAATATCTCAGGAACTACATGGAACCAAACCCAAGAACCT 824
Query 727 ATGTCAGCAGCAAAGGCTATTCCTTCACCAAGAAAACCGAGGTTCTTCTTACCAAAATCA 786
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 825 ATGTCAGCAGCAAAGGCTATTCCTTCACCAAGAAAACTGAGGTTCTTCTCACCAAAATCA 884
Query 787 CCCCATTGCTGGAGCGAGTCGAGATCACAGAAGTCGGTGAAGCTATGGAGGAATGAAT-C 845
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| |
Sbjct 885 CCCCATTGCTGGAGCGAGTCGAAATCACAGAAGTTGGTGAAGCTATGGAGGAAT-AATTC 943
Query 846 AATAAATC 853
||| ||||
Sbjct 944 AATCAATC 951
> AT5G40580.1 | Symbols: PBB2 | 20S proteasome beta subunit PBB2
| chr5:16248286-16250756 REVERSE LENGTH=1199
Length=1199
Score = 1016 bits (550), Expect = 0.0
Identities = 740/833 (89%), Gaps = 7/833 (1%)
Strand=Plus/Plus
Query 18 AAAATGTCGCAATCAGCCGTAGATGTTCCGCCAAAGGGTGGGTTTAGCTTCGATCTGTGT 77
||||||||||| || |||| ||| | |||||||| |||||||||||||||||||||||
Sbjct 147 AAAATGTCGCAGTCTTCCGTCGATATACCGCCAAAAGGTGGGTTTAGCTTCGATCTGTGC 206
Query 78 AAGAGAAATGATATGCTTACACAAAAGGGTCTTAAAGCTCCGTCTTTTTTGAAGACTGGA 137
|| || ||||||||||| ||||| |||||||||||||| ||||| ||| | |||||||||
Sbjct 207 AAAAGGAATGATATGCTGACACAGAAGGGTCTTAAAGCGCCGTCGTTTCTCAAGACTGGA 266
Query 138 ACAACCATCGTTGGTTTGAT-TTTCAAGGATGGTGTGATACTAGGGGCGGATACCCGAGC 196
|| || |||||||| ||||| ||| ||||||||||| ||||| ||||| ||||| || ||
Sbjct 267 ACGACTATCGTTGGATTGATATTT-AAGGATGGTGTAATACTTGGGGCTGATACACGGGC 325
Query 197 AACTGAGGGGCCAATTGTTGCTGATAAGAACTGTGAGAAGATTCACTATATGGCACCAAA 256
|||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 326 AACTGAAGGGCCTATTGTGGCTGATAAGAACTGTGAGAAGATTCACTACATGGCACCAAA 385
Query 257 CATTTATTGCTGTGGTGCAGGAACTGCGGCCGACACTGAAGCAGTCACTGATATGGTCAG 316
|||||| || |||||||||||||| || || |||||||||||||| ||||||||||||||
Sbjct 386 CATTTACTGTTGTGGTGCAGGAACCGCTGCTGACACTGAAGCAGTAACTGATATGGTCAG 445
Query 317 CTCACAGCTGCGGTTGCATCGTTACCAGACTGGTCGTGACTCTCGGGTCATTACTGCTTT 376
||||||||||||||||||| | ||||||||||| || || ||||| ||| ||||||| ||
Sbjct 446 CTCACAGCTGCGGTTGCATAGATACCAGACTGGCCGAGATTCTCGAGTCGTTACTGCATT 505
Query 377 GACCCTTCTCAAAAAACATCTATTCAGCTATCAAGGTCATGTCTCTGCTGCTCTTGTGCT 436
||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct 506 GACCCTTCTCAAAAAACATCTTTTCAGCTACCAAGGCCATGTCTCAGCTGCTCTTGTGCT 565
Query 437 CGGTGGAGTTGATATCACTGGCCCTCATCTGCATACTATATACCCACACGGTTCAACTGA 496
|||||||||||||| || || |||||||| || || ||||||||||||||||| |||||
Sbjct 566 TGGTGGAGTTGATATTACCGGGCCTCATCTTCACACGATATACCCACACGGTTCTACTGA 625
Query 497 CACTCTTCCATTCGCTACAATGGGTTCTGGTTCTCTTGCTGCTATGTCTGTGTTTGAGGC 556
|||||| ||||| |||||||||||||||||||| |||||||| ||||| |||||||| ||
Sbjct 626 CACTCTACCATTTGCTACAATGGGTTCTGGTTCCCTTGCTGCCATGTCAGTGTTTGAAGC 685
Query 557 AAAGTATAAAGAAGGGCTAACTAGGGATGAAGGAATTAAGCTGGTCGCTGAAGCCATATG 616
||||||||||||||| |||||||| ||||||||||| ||| |||| ||||||||||||||
Sbjct 686 AAAGTATAAAGAAGGTCTAACTAGAGATGAAGGAATCAAGTTGGTTGCTGAAGCCATATG 745
Query 617 CTCGGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTGGACATCTGCGTGATCACTAA 676
||| ||||||||||| ||||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct 746 CTCTGGTATATTCAACGACCTTGGTAGTGGTAGCAATGTGGATATCTGTGTGATCACTAA 805
Query 677 GGGGAACAAAGAATATCT-GAGGAACTACATGGAACCAAACCCAAGAACCTATGTCAGCA 735
|||| |||| ||||| || |||||| ||||||||||||||||||||||||||||| ||||
Sbjct 806 GGGGCACAAGGAATA-CTTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTTAGCA 864
Query 736 GCAAAGGCTATTCCTTCACCAAGAAAACCGAGGTTCTTCTTACCAAAATCACCCCATTGC 795
||||||||||||| ||||||||||||||||||||||| || |||||||| || |||||
Sbjct 865 GCAAAGGCTATTCATTCACCAAGAAAACCGAGGTTCTACTCACCAAAATTACACCATTAT 924
Query 796 TGGAGCGAGTCGAGATCACAGAAGT--C-GGTGAAGCTATGGAGGAATGAATC 845
||||||||||||| || |||||| | ||||||||||||||||||||||||
Sbjct 925 TGGAGCGAGTCGAAATTGTAGAAGTGGCTGGTGAAGCTATGGAGGAATGAATC 977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42196683480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5