BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg936534 Length=846 Score E Sequences producing significant alignments: (Bits) Value AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II... 1240 0.0 AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light ha... 894 0.0 AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light ha... 865 0.0 > AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II light harvesting complex gene 2.3 | chr3:10255947-10257011 FORWARD LENGTH=946 Length=946 Score = 1240 bits (671), Expect = 0.0 Identities = 778/831 (94%), Gaps = 1/831 (0%) Strand=Plus/Plus Query 17 aaG-AATGGCAACTTCAGCAATCCAACACTCCTCTTTCGCCGGCCAAACGACCCTGAAGC 75 ||| |||||| |||||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct 51 AAGCAATGGCCACTTCAGCAATCCAACACTCTTCTTTCGCTGGCCAAACGACCCTAAAGC 110 Query 76 CATCCAACGATCTCATTCGTAAGGTCGGAGCCTCCAATGGTGGCGGCCGCGTCGTCATGC 135 |||||||||||||| | || || |||||||||||||||| || |||||| || |||||| Sbjct 111 CATCCAACGATCTCCTCCGCAAAATCGGAGCCTCCAATGGCGGTGGCCGCATCATCATGC 170 Query 136 GACGTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACC 195 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 171 GTCGTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACC 230 Query 196 TAGGACCATTCTCGGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACG 255 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 231 TAGGACCATTTTCCGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACG 290 Query 256 GCTGGGACACCGCCGGTCTCTCAGCTGATCCAGAAACATTCGCAAAGAACCGTGAGCTCG 315 | ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 291 GTTGGGACACCGCTGGTCTCTCAGCCGATCCAGAAACATTCGCAAAGAATCGTGAGCTCG 350 Query 316 AAGTAATCCACAGTAGATGGGCAATGTTGGGCGCTTTAGGCTGCACCTTCCCAGAAATTC 375 |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 351 AAGTGATCCACAGTAGATGGGCAATGTTGGGAGCTTTAGGCTGCACCTTCCCTGAAATTC 410 Query 376 TCTCCAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCACAGATCT 435 |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 411 TCTCAAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCTCAAATCT 470 Query 436 TCTCAGAAGGAGGACTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATAT 495 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 471 TCTCAGAAGGAGGGCTTGACTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATAT 530 Query 496 TAGCCATTTGGGCTTGTCAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAG 555 |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 TAGCTATATGGGCGTGTCAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAG 590 Query 556 GTGGGCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGCGGAGCGTTTGACCCGTTGA 615 |||| |||||||| ||||| |||||||| |||||||| ||||| || || |||||||||| Sbjct 591 GTGGTCCTCTTGGGGAAGGGCTTGACCCGCTTTACCCGGGCGGGGCCTTCGACCCGTTGA 650 Query 616 ACTTAGCGGAGGATCCAGAAGCATTCTCGGAATTGAAGGTGAAGGAGCTCAAAAACGGTC 675 |||||||||||||||||||||| || || || ||||| ||||||||||| |||||||||| Sbjct 651 ACTTAGCGGAGGATCCAGAAGCGTTTTCAGAGTTGAAAGTGAAGGAGCTTAAAAACGGTC 710 Query 676 GTCTTGCGATGTTCTCAATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGTAAAGGTC 735 ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 711 GTCTTGCTATGTTCTCAATGTTTGGATTCTTTGTCCAAGCCATAGTTACCGGTAAAGGTC 770 Query 736 CGATAGAGAATCTGTTCGATCACATTGCAGACCCTGTGGCTAACAACGCTTGGGCTTACG 795 |||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 771 CGATCGAAAATCTGTTCGATCACATTGCAGACCCTGTGGCTAACAATGCTTGGGCTTACG 830 Query 796 CCACCAACTTTGTCCCCGGAAAATAGAGTTTGATCGGATAATTTATGTAAA 846 |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 831 CCACCAACTTCGTCCCCGGAAAATAGAGTTTGATCGGATAATTTATGTAAA 881 > AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light harvesting complex gene 2.1 | chr2:1823240-1824425 REVERSE LENGTH=1101 Length=1101 Score = 894 bits (484), Expect = 0.0 Identities = 698/802 (87%), Gaps = 11/802 (1%) Strand=Plus/Plus Query 20 AATGGCAACTTCAGCAATCCAACACTCCTCTTTCGCCGGCCAAACGACCCTGAAGCCATC 79 ||||||||| ||||| ||||| || ||||| ||||||||||||||| | || ||||| || Sbjct 94 AATGGCAACATCAGCTATCCAGCAATCCTCCTTCGCCGGCCAAACGGCTCTCAAGCCCTC 153 Query 80 CAACGATCTCATTCGTAAGGTCGGAGCCTCCAATGGTGGCGGCCGCGTCG-TCATGCGAC 138 |||||| ||| | || ||||| || | ||| ||||| ||||| || | |||||| | Sbjct 154 CAACGAACTCCTCCGCAAGGTTGGTGTATCC---GGTGGTGGCCGTGT-GACCATGCGTC 209 Query 139 GTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACCTAG 198 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| Sbjct 210 GTACCGTCAAGTCTACTCCTCAAAGCATCTGGTACGGACCAGACCGTCCCAAGTACTTAG 269 Query 199 GACCATTCTCGGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACGGCT 258 ||||||||||||| || ||||| || |||||||||||||||||||| ||||||||||||| Sbjct 270 GACCATTCTCGGAGAATACACCGTCCTACCTAACCGGAGAATACCCCGGAGACTACGGCT 329 Query 259 GGGACACCGCCGGTCTCTCAGCTGATCCAGAAACATTCGCAAAGAACCGTGAGCTCGAAG 318 |||||||||| || ||||| ||||| || || |||||||| |||||||||||||| |||| Sbjct 330 GGGACACCGCTGGACTCTCGGCTGACCCGGAGACATTCGCTAAGAACCGTGAGCTTGAAG 389 Query 319 TAATCCACAGTAGATGGGCAATGTTGGGCGCTTTAGGCTGCACCTTCCCAGAAATTCTCT 378 |||||||||| |||||||| |||||||| ||| | || ||||| ||||| || ||||||| Sbjct 390 TAATCCACAGCAGATGGGCTATGTTGGGTGCTCTCGGATGCACATTCCCTGAGATTCTCT 449 Query 379 CCAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCACAGATCTTCT 438 |||| ||||| || |||||||| ||||||||||||||||||||||| || ||||| |||| Sbjct 450 CCAAGAACGGTGTTAAATTCGGAGAAGCCGTGTGGTTCAAGGCAGGTTCTCAGATTTTCT 509 Query 439 CAGAAGGAGGACTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATATTAG 498 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 510 CAGAAGGAGGTCTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATCTTAG 569 Query 499 CCATTTGGGCTTGT-CAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAGGT 557 |||| |||||| || ||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 570 CCATCTGGGCT-GTTCAAGTTGTGCTCATGGGGTTCATTGAAGGCTACAGAATCGGAGGT 628 Query 558 GGGCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGCGGAGCGTTTGACCCGTTGAAC 617 || ||||| || ||||| |||||||| |||||||| || || ||||| ||||| |||||| Sbjct 629 GGACCTCTCGGAGAAGGGCTTGACCCGCTTTACCCCGGAGGTGCGTTCGACCCATTGAAC 688 Query 618 TTAGCGGAGGATCCAGAAGCATTCTCGGAATTGAAGGTGAAGGAGCTCAAAAACGGTCGT 677 || || ||||||||||| || ||||| || |||||||||||||||| || ||||||||| Sbjct 689 TTGGCTGAGGATCCAGAGGCTTTCTCTGAGCTGAAGGTGAAGGAGCTTAAGAACGGTCGT 748 Query 678 CTTGCGATGTTCTCAATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGTAAAGGTCCG 737 ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 749 CTTGCCATGTTCTCTATGTTTGGATTCTTTGTCCAAGCCATTGTTACTGGTAAAGGTCCC 808 Query 738 ATAGAGAATCTG-TTCGATCACATTG-CAGACCCTGTGGCTAACAACGCTTGGGCTTACG 795 || ||||| || || ||||| ||| | || ||||||||||||||||| ||| |||||| Sbjct 809 ATTGAGAA-CTTATTTGATCAT-TTGGCTGATCCTGTGGCTAACAACGCCTGGTCTTACG 866 Query 796 CCACCAACTTTGTCCCCGGAAA 817 | || ||||||||||||||||| Sbjct 867 CTACTAACTTTGTCCCCGGAAA 888 > AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light harvesting complex gene 2.2 | chr2:1799234-1800392 REVERSE LENGTH=1063 Length=1063 Score = 865 bits (468), Expect = 0.0 Identities = 694/803 (86%), Gaps = 15/803 (2%) Strand=Plus/Plus Query 21 ATGGCAACTTCAGCAATCCAACACTCCTCTTTCGCCGGCCAAACGACCCTGAAGCCATCC 80 ||||| || ||||| |||||||| ||||| ||||||||||||||| | || ||||| ||| Sbjct 64 ATGGCCACATCAGCTATCCAACAATCCTCCTTCGCCGGCCAAACGGCTCTCAAGCCCTCC 123 Query 81 AACGATCTCATTCGTAAGGTCGGAGCCTCCAAT-GGTGGCGGCCGCGTCG-TCATGCGAC 138 | ||| ||||| | ||||| || || | | | || || ||||| || | |||||| | Sbjct 124 AGCGACCTCATCCAAAAGGT-GG-GCGT-C-TTGGGCGGTGGCCGTGT-GACCATGCGTC 178 Query 139 GTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACCTAG 198 ||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||| | | Sbjct 179 GTACCGTCAAGTCTACTCCCCAAAGCATCTGGTATGGACCAGACCGTCCCAAGTACTTGG 238 Query 199 GACCATTCTCGGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACGGCT 258 ||||||||||||| |||||||| || ||| |||| ||||||||||| ||||||||||||| Sbjct 239 GACCATTCTCGGAGAACACACCGTCTTACTTAACTGGAGAATACCCCGGAGACTACGGCT 298 Query 259 GGGACACCGCCGGTCTCTCAGCTGATCCAGAAACATTCGCAAAGAACCGTGAGCTCGAAG 318 |||||||||| || ||||| ||||| || || |||||||| |||||||||||||| |||| Sbjct 299 GGGACACCGCTGGACTCTCGGCTGACCCGGAGACATTCGCTAAGAACCGTGAGCTTGAAG 358 Query 319 TAATCCACAGTAGATGGGCAATGTTGGGCGCTTTAGGCTGCACCTTCCCAGAAATTCTCT 378 |||||||||| |||||||| |||||||| ||| | || ||||| ||||| |||||||||| Sbjct 359 TAATCCACAGCAGATGGGCTATGTTGGGTGCTCTCGGATGCACATTCCCTGAAATTCTCT 418 Query 379 CCAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCACAGATCTTCT 438 |||| ||||| || |||||||| ||||||||||||||||||||||| || ||||| |||| Sbjct 419 CCAAGAACGGTGTTAAATTCGGAGAAGCCGTGTGGTTCAAGGCAGGCTCTCAGATTTTCT 478 Query 439 CAGAAGGAGGACTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATATTAG 498 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 479 CAGAAGGAGGTCTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATCTTAG 538 Query 499 CCATTTGGGCTTGT-CAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAGGT 557 |||| |||||| || ||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 539 CCATCTGGGCT-GTTCAAGTTGTGCTCATGGGGTTCATTGAAGGCTACAGAATCGGAGGT 597 Query 558 GGGCCTCTTGGTGAAGGACTTGACCCACTTTA-CCCTGGCGGAGCGTTTGACCCGTTGAA 616 || || || || |||||||||||||| ||||| ||| || || ||||| ||||| ||||| Sbjct 598 GGACCACTCGGAGAAGGACTTGACCCGCTTTATCCC-GGAGGTGCGTTCGACCCATTGAA 656 Query 617 CTTAGCGGAGGATCCAGAAGCATTCTCGGAATTGAAGGTGAAGGAGCTCAAAAACGGTCG 676 ||| || ||||||||||| || ||||| || ||||||||||||||||||| |||||||| Sbjct 657 CTTGGCTGAGGATCCAGAGGCTTTCTCTGAGCTGAAGGTGAAGGAGCTCAAGAACGGTCG 716 Query 677 TCTTGCGATGTTCTCAATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGTAAAGGTCC 736 |||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 717 TCTTGCCATGTTCTCTATGTTTGGATTCTTTGTCCAAGCCATTGTTACTGGTAAAGGTCC 776 Query 737 GATAGAGAATCTG-TTCGATCACATTG-CAGACCCTGTGGCTAACAACGCTTGGGCTTAC 794 || ||||| || || ||||| ||| | || ||||||||||||||||| ||| ||||| Sbjct 777 CATTGAGAA-CTTATTTGATCAT-TTGGCTGATCCTGTGGCTAACAACGCCTGGTCTTAC 834 Query 795 GCCACCAACTTTGTCCCCGGAAA 817 || || ||||||||||||||||| Sbjct 835 GCTACTAACTTTGTCCCCGGAAA 857 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41242234687 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5