BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg936543 Length=704 Score E Sequences producing significant alignments: (Bits) Value AT3G27750.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1000 0.0 > AT3G27750.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10284808-10285874 FORWARD LENGTH=1067 Length=1067 Score = 1000 bits (541), Expect = 0.0 Identities = 642/690 (93%), Gaps = 10/690 (1%) Strand=Plus/Plus Query 20 TAATGGCGCTTTCTCTCAGCCAGACTCGACCACCAAGCCTTAGCC-T-----TAACCTTA 73 ||||||||||||||||||||||||||||||||||||||||||||| | || ||||| Sbjct 11 TAATGGCGCTTTCTCTCAGCCAGACTCGACCACCAAGCCTTAGCCATAGCCATACCCTTA 70 Query 74 GCGTCGTCGTTCCTAAGAGAAGGTTAGTTTCAATCCGATGCGGTCCACGCGACAACCGCG 133 ||||| ||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||| Sbjct 71 GCGTCATCGTTCCTAAGAGAACGTTCGTTTCGATCCGATGCGGTCCACGAGACAACCGCG 130 Query 134 GACCACTTCTCAAAGGTCGAATCCTAAGCACCGAAGCAATCCAATCGATCCAATCTCTCA 193 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 131 GACCACTTCTCAAAGGCCGAATCCTAAGCACCGAAGCAATCCAATCAATCCAATCTCTCA 190 Query 194 AACGAGCACATCGAACCGGTAG-CTCAATCTCTCTTACCCTCCGTCCTCTCCGCCGTCTC 252 ||||||| |||||||||||| | ||| |||| ||||||||||||||||||||||||||| Sbjct 191 AACGAGCTCATCGAACCGGT-GTCTCCCTCTCCCTTACCCTCCGTCCTCTCCGCCGTCTC 249 Query 253 ATAAAATCCGATCTCGTCTCCGTCCTCCGTGAGCTTCTCCGTCAAGACTACTGCACACTC 312 ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 250 ATAAAATCCGATCTCATCTCCGTCCTCCGTGAGCTTCTCCGTCAAGACTATTGCACACTC 309 Query 313 GCTGTCCATGTTCTCTCCACTCTTCGTTCAGAGTATCCTCCTCTCGACCTTGTTCTATAC 372 ||||||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||| Sbjct 310 GCTGTCCATGTACTCTCCACTCTCCGTACAGAGTATCCTCCTCTTGACCTTGTTCTATAC 369 Query 373 GCCGATATCGTTAATGCTCTTTCTAGGAACAAAGAGTTCGATGAGATAGATCGTCTTATT 432 || || || |||||||||||| | ||||| |||||||||||||||||||||||||||||| Sbjct 370 GCAGACATTGTTAATGCTCTTACGAGGAATAAAGAGTTCGATGAGATAGATCGTCTTATT 429 Query 433 GGAGAAATTGAAGGAATTGATCAAAGAAGTGATGATAAGGCTTTAGCTAAGTTGATTAGA 492 || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 430 GGTGAAATTGATGGAATTGATCAAAGAAGTGATGATAAGGCTTTAGCTAAGTTGATTAGG 489 Query 493 GCGGTGGTTGGAGCTGAGAGGAGAGAGTCGGTGGTTAGGGTTTATACCTTGATGAGAGAA 552 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 490 GCTGTGGTTGGAGCTGAGAGGAGAGAGTCGGTGGTTAGGGTTTATACCTTGATGAGGGAA 549 Query 553 AGTGGGTGGGGGTCTGAGTCGTGGGAGGCTGATGAGTATGTGGCTGAGGTTCTGAGCAAG 612 ||||| |||||||||||||| |||||||||||||||||||| ||||||||| |||| ||| Sbjct 550 AGTGGTTGGGGGTCTGAGTCATGGGAGGCTGATGAGTATGTCGCTGAGGTTTTGAGTAAG 609 Query 613 GGTCTCTTGAGACTAGGAGAGCAAGACTTGGCTGCTCAGGTCTCACTCAAATCTTCAATT 672 |||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||| Sbjct 610 GGTCTCTTGAGACTAGGAGAGCCAGACTTGGCTTCTCAAGTCTCACTCAAATCTTCAATT 669 Query 673 CTAAACCCTTGAATTTTTCGGGTTTTTCGG 702 ||||| ||||||||||| |||||||| ||| Sbjct 670 CTAAAACCTTGAATTTT-CGGGTTTT-CGG 697 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34108985813 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5