BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936802

Length=704
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00790.1 | Symbols: RPL16 | ribosomal protein L16 | chrC:811...   320    1e-86


> ATCG00790.1 | Symbols: RPL16 | ribosomal protein L16 | chrC:81189-82652 
REVERSE LENGTH=408
Length=408

 Score =  320 bits (173),  Expect = 1e-86
 Identities = 179/182 (98%), Gaps = 0/182 (0%)
 Strand=Plus/Plus

Query  523  CCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATATCTTCTCGT  582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10   CCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATATCTTCTCGT  69

Query  583  GGGAATCATATTTGTTTTGGCAGATATGCTCGTCAAACACTTGAACCCGCTTGGATCACA  642
            ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  70   GGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCTTGGATCACA  129

Query  643  TCTAGACAAATAGAAGCAGGGCGACGAGCAATGACACGAAATGTACGACGTGGTGGAAAA  702
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  130  TCTAGACAAATAGAAGCAGGGCGACGCGCAATGACACGAAATGTACGACGTGGTGGAAAA  189

Query  703  AT  704
            ||
Sbjct  190  AT  191



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34108985813


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5