BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936924
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 830 0.0
AT5G20790.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 135 4e-31
> AT3G43110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: petal, flower;
EXPRESSED DURING: 4 anthesis, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G20790.1); Has 30 Blast hits to
30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:15091611-15092467 REVERSE
LENGTH=857
Length=857
Score = 830 bits (449), Expect = 0.0
Identities = 551/599 (92%), Gaps = 11/599 (2%)
Strand=Plus/Plus
Query 1 TAACAAAAACATTTTCAGAAATGGCGACTTTGGATTCTCCGTTGGAGGTTTTGGCTTTCG 60
||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 164 TAATAAAAACA-TTTCAGAAATGGCGACTTTGGATTCTCCGTTAGAGGTTTTGGCTTTCG 222
Query 61 ACTACGTTAACTTCGTCTTTAACAATCTTTGGACATGGATTGCCGTGGTGACGGCCGCCG 120
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 223 ACTACGTTAACTTCGTCTTTAACAATCTTTGGACATGGATCGCCGTCGTGACGGCCGCCG 282
Query 121 TTAGTTTCTGGCGTATCCGAG---CTA-CA--ACCACCAGCGGGGGCGGCGGTAGAGACG 174
||||||||||||| ||||||| ||| || ||||||| | | || || |||||||||
Sbjct 283 TTAGTTTCTGGCGGATCCGAGCCACTACCACTACCACCACCAGCGGAGGTGGTAGAGACA 342
Query 175 ACGGTTTCATAGATGAATCTCCTCGTGAGCCACCTAAACCACAAGCCACGAAGGCTGCTC 234
| || || |||||||||||| || ||||||||| ||||||||||| || ||||||||||
Sbjct 343 ATGGCTTAATAGATGAATCTTTTCTTGAGCCACCAAAACCACAAGCGACAAAGGCTGCTC 402
Query 235 TTGTTGTGGAGACGAAACCTCATAAAGTTAAGGTAACGGAGACGGAAGATTGGAGTTTGT 294
| || ||||||||||||||| || ||| |||||||||||||| || |||||||||||||
Sbjct 403 TCCTTATGGAGACGAAACCTCCTAGAGTCAAGGTAACGGAGACTGAGGATTGGAGTTTGT 462
Query 295 TGTTGTGTAATGACGGAGTAACGAAGGGGAAGCTAACGGTGTACTAC-AAGGAA-ATGAT 352
|||||||||| |||||||||||||||||||||||||| ||||||||| || ||| | |||
Sbjct 463 TGTTGTGTAAGGACGGAGTAACGAAGGGGAAGCTAACCGTGTACTACGAA-GAAGA-GAT 520
Query 353 TGACGGAGAGAGAGAAGAAGATGACGGAGAGACAACGGTCGTTAAGTAtggaggaggtga 412
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 521 TGACGGAGAGAGAGAAGAAGATGACGGAGAGACAACGGCCGTTAAGTATGGAGGAGGTGA 580
Query 413 gagtggagagtggtgggagagatgggagacagtggtgaagatgagaaatggagatgaAGG 472
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 581 GAGTGGAGAATGGTGGGAGAGATGGGAGAGAGTGGTGAAGATGAGAAATGGAGATGAAGG 640
Query 473 TTGGTACCGTTACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTGTGGGATGC 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TTGGTACCGTTACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTGTGGGATGC 700
Query 533 TAACGGAGTCCGTAACGGTGGTTGGGTTAGTGTGCAGCGTAAGGAGTGTTATGGTTGAG 591
|||| | || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 701 TAACCGTGTACGTAACGGTGGTTGGGTTAGTGTGCAACGTAAGGAGTGTTATGGTTGAG 759
> AT5G20790.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant
structures; EXPRESSED DURING: LP.04 four leaves visible, 4
anthesis, petal differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G43110.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink). | chr5:7039911-7040654 REVERSE LENGTH=744
Length=744
Score = 135 bits (73), Expect = 4e-31
Identities = 99/111 (89%), Gaps = 4/111 (4%)
Strand=Plus/Plus
Query 423 tggtgggagagatggga-gacagtggtgaagatgagaaatggagatga-AGGTTGGTACC 480
|||||||||| |||||| | |||||||| |||||||||||| ||||| | |||||||||
Sbjct 466 TGGTGGGAGAAATGGGATG-GAGTGGTGAGGATGAGAAATGGTGATGACA-GTTGGTACC 523
Query 481 GTTACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTGTGGGATG 531
||||||||||||||||||||||||| |||||||| || ||||| |||||||
Sbjct 524 GTTACGTGGATTTAACGGTGATTAATGGAAATGTGGTAAGGTTATGGGATG 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29386975995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5