BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937101 Length=305 Score E Sequences producing significant alignments: (Bits) Value ATCG00640.1 | Symbols: RPL33 | ribosomal protein L33 | chrC:674... 134 6e-31 > ATCG00640.1 | Symbols: RPL33 | ribosomal protein L33 | chrC:67488-67688 FORWARD LENGTH=201 Length=201 Score = 134 bits (72), Expect = 6e-31 Identities = 78/81 (96%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 114 AACACCCCTAGTCGATTGGAATTGAAAAAATTCTGTCCATATTGTTGTAAACATACAATT 173 ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| Sbjct 121 AACACCCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTATTGTTATAAACATACAATT 180 Query 174 CACGGGGAAATCAAGAAATAG 194 ||||||||||||||||||||| Sbjct 181 CACGGGGAAATCAAGAAATAG 201 Score = 115 bits (62), Expect = 2e-25 Identities = 81/90 (90%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 21 ATGGCCAA-GGTAAAGATGTTAAGAGTAACAATTATTTTGGAATGTACCAGTAGTTTTCG 79 |||||||| |||||||||||| ||||||||||||||||||||||||||||| || |||| Sbjct 1 ATGGCCAAGGGTAAAGATGTT-CGAGTAACAATTATTTTGGAATGTACCAGTTGTGTTCG 59 Query 80 AAATTATATTAAGAAAGCATCGGCGGGAAT 109 |||| |||||||||||| | | |||||||| Sbjct 60 AAATGATATTAAGAAAGAAGCCGCGGGAAT 89 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14125237469 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5