BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937101

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00640.1 | Symbols: RPL33 | ribosomal protein L33 | chrC:674...   134    6e-31


> ATCG00640.1 | Symbols: RPL33 | ribosomal protein L33 | chrC:67488-67688 
FORWARD LENGTH=201
Length=201

 Score =  134 bits (72),  Expect = 6e-31
 Identities = 78/81 (96%), Gaps = 0/81 (0%)
 Strand=Plus/Plus

Query  114  AACACCCCTAGTCGATTGGAATTGAAAAAATTCTGTCCATATTGTTGTAAACATACAATT  173
            ||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct  121  AACACCCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTATTGTTATAAACATACAATT  180

Query  174  CACGGGGAAATCAAGAAATAG  194
            |||||||||||||||||||||
Sbjct  181  CACGGGGAAATCAAGAAATAG  201


 Score =  115 bits (62),  Expect = 2e-25
 Identities = 81/90 (90%), Gaps = 2/90 (2%)
 Strand=Plus/Plus

Query  21   ATGGCCAA-GGTAAAGATGTTAAGAGTAACAATTATTTTGGAATGTACCAGTAGTTTTCG  79
            |||||||| ||||||||||||  ||||||||||||||||||||||||||||| || ||||
Sbjct  1    ATGGCCAAGGGTAAAGATGTT-CGAGTAACAATTATTTTGGAATGTACCAGTTGTGTTCG  59

Query  80   AAATTATATTAAGAAAGCATCGGCGGGAAT  109
            |||| |||||||||||| | | ||||||||
Sbjct  60   AAATGATATTAAGAAAGAAGCCGCGGGAAT  89



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14125237469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5