BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937195 Length=1393 Score E Sequences producing significant alignments: (Bits) Value AT3G45260.1 | Symbols: | C2H2-like zinc finger protein | chr3:... 2025 0.0 AT1G55110.1 | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain ... 377 1e-103 AT5G03150.1 | Symbols: JKD | C2H2-like zinc finger protein | ch... 374 2e-102 AT3G13810.2 | Symbols: IDD11 | indeterminate(ID)-domain 11 | ch... 372 6e-102 > AT3G45260.1 | Symbols: | C2H2-like zinc finger protein | chr3:16596381-16598698 REVERSE LENGTH=1885 Length=1885 Score = 2025 bits (1096), Expect = 0.0 Identities = 1308/1405 (93%), Gaps = 36/1405 (3%) Strand=Plus/Plus Query 1 TCAACTAAACCAATATCAACATGATGATGCCAGATGATCATCATCATCTCTCATTTCCCA 60 |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 129 TCAACTAAACCAATATCAGCATGATGATGCCAGATGATCATCATCCCCTCTCATTTCCCA 188 Query 61 GCTATGTCCTTCACCAAGAACACATCACCCCAAATCCTAACCCTAACCCTAATCATACCT 120 |||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| Sbjct 189 GCTATGTCCTTCACCAAGAACACATCGCTCCAAATCCTAACCCTAACCCTAATCCTACCT 248 Query 121 CCTCTAACTCAGCCAAGAGGAAGAGAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 249 CCTCTAACTCAGCCAAGAGGAAGAGAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAG 308 Query 181 TCATCGCTCTATCGCCAAACTCCCTCATGGCGACAAATCGATTCATATGCGAGATTTGCA 240 ||||||||||||| ||||||||||||||| | || ||||||||||| |||||| |||||| Sbjct 309 TCATCGCTCTATCACCAAACTCCCTCATGACAACTAATCGATTCATCTGCGAGGTTTGCA 368 Query 241 ACAAAGGGTTTAAGAGAGACCAGAACCTTCAGCTTCACCGGAGAGGCCATAACCTTCCAT 300 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 369 ACAAAGGATTTAAGAGAGACCAGAACCTTCAGCTTCACCGGAGAGGCCATAACCTTCCAT 428 Query 301 GGAAGCTAAAGCAAAGGACAAACAAGGAGCAAGTGAAGAAAAAAGTGTACATCTGTCCAG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 429 GGAAGCTAAAGCAAAGGACAAACAAGGAGCAAGTGAAGAAAAAAGTGTACATCTGTCCAG 488 Query 361 AGAAGAGCT-GCGTACACCATGACCCGGCCCGAGCCCTCGGTGACTTAACCGGAATCAAG 419 |||||| || |||||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 489 AGAAGA-CTTGCGTACACCATGACCCGGCCCGAGCCCTTGGTGACTTAACTGGAATTAAG 547 Query 420 AAGCATTTCAGCAGAAAACATGGTGAGAAA-AAGTGGAAATGTGACAAGTGTTCCAAGAA 478 |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 548 AAGCATTTCAGCAGGAAACATGGTGA-AAAGAAGTGGAAATGTGACAAGTGTTCCAAGAA 606 Query 479 ATATGCTGTCATGTCCGATTGGAAAGCTCATAGCAAGATTTGTGGTACTAGAGAATACAG 538 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 607 ATATGCTGTCATGTCCGATTGGAAAGCTCATAGCAAGATTTGTGGTACTAAAGAATACAG 666 Query 539 ATGTGACTGTGGTACCCTCTTTTCCAGGAAAGATAGTTTCATCACACATAGAGCATTCTG 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 667 ATGTGACTGTGGTACCCTCTTTTCCAGGAAAGATAGTTTCATCACACATAGAGCATTCTG 726 Query 599 TGACGCCTTAGCTGAAGAGAATGCTAGATTCGTCTCAGTTCCACCAGCACCAGCCGCACC 658 |||||| ||||||||||||| ||||||||| |||||||||||||||||||| | ||| Sbjct 727 TGACGCTTTAGCTGAAGAGAGTGCTAGATTTGTCTCAGTTCCACCAGCACC--C-GCA-- 781 Query 659 GGCACCCGCATATTTGAACAATCCCCCGGATGGGGAAGTCAACCTTGGAAACATCAATCA 718 |||||||||||| ||| ||||| ||||||||||| |||||| ||||| || Sbjct 782 ----------TATTTGAACAATGCCCTGGATGTGGAAGTCAACCATGGAAATATCAACCA 831 Query 719 AAATCATCAACAACGACAAG-TTCATACTACATCTTCTCCATTGGACCAACCCGGTTTCA 777 |||||||||||||||||| | || ||||||| || || | |||||||||||| ||||| | Sbjct 832 AAATCATCAACAACGACA-GCTTAATACTACTTCGTCACAATTGGACCAACCTGGTTTTA 890 Query 778 ATATCCA-TCGCAATGACATTGCCTTTTTGGGACAAACCTTACCAACCAACGTTTTTGCG 836 ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 891 ATA-CCAATCGCAATAACATTGCCTTTTTGGGACAAACCTTACCAACCAACGTTTTTGCG 949 Query 837 TCCTCATCATCCCCATCACCTCGTAGTGCATCCGACTCCCTTCAAAATTTATGGCATTTA 896 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 950 TCCTCATCATCTCCATCACCTCGTAGTGCATCCGACTCCCTTCAAAATCTATGGCATTTA 1009 Query 897 CAAGGACAATCATCTCACCAGTGGCTTCTCAATGAAAACAAGAACAACAACA------TT 950 |||||||||||||||||||| ||||||||||| |||||||| |||||||||| || Sbjct 1010 CAAGGACAATCATCTCACCAATGGCTTCTCAACGAAAACAACAACAACAACAACAACATT 1069 Query 951 CTCCAAAGGGGAATCTCCAAGAATCAAGAAGAATGTGAGATCAAGAATGTGATTAGTAAT 1010 |||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| Sbjct 1070 CTCCAAAGGGGAATCTCCAAAAATCAAGAAGAACATGAGATGAAGAATGTGATTAGTAAT 1129 Query 1011 GGGTCTTTGTTCTCTTCGGAAGCACGCAACAACACTAATAGTTATAACCAAGACTGTGGA 1070 || ||||||||||||||||||||||| ||||||||||||| |||||||||| || ||||| Sbjct 1130 GGTTCTTTGTTCTCTTCGGAAGCACGAAACAACACTAATAATTATAACCAAAACGGTGGA 1189 Query 1071 CAAAGAGCATCAATGTCAGCCACGGCATTGCTACAAAAGGCAGCTCAAATGGGATCAAAG 1130 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1190 CAAATAGCATCAATGTCAGCCACGGCATTGCTACAAAAGGCAGCTCAAATGGGATCAAAG 1249 Query 1131 AGATCATCATCATCAAGCTCAAACAATAGCAAGACTTTTGGTCTAATAACCTCTATCTTC 1190 |||||||||||| | |||||| |||||||||||||||||||||||| |||||||||||| Sbjct 1250 AGATCATCATCA--A-GCTCAAGCAATAGCAAGACTTTTGGTCTAATGACCTCTATCTTC 1306 Query 1191 AACAACAAACAAGGAGAGAATATCAAAACAAAGGAAGTTGATGAAAGAGGCTTCACGAGA 1250 ||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 1307 AACAACAAACAAGCAGAGAATATCAAAACTAAGGAAGTTGATGAAAGAGGTTTCACGAGA 1366 Query 1251 GACTTTCTTGGTGTGGGAAGTCAACACCGTCCTTGGCCATTATTGATGGTCAACCATAAT 1310 |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 1367 GACTTTCTTGGTGTGGGAAGTCAACACCGTTCTTGGCCGTTATTGATGGTCAACCATAAT 1426 Query 1311 CTTCCCA-ACTCGTCTCCTTCGGCCACCACTGACGGCACACCAACCGCGGACATGAACCA 1369 ||||| | ||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 1427 CTTCC-AGACTCGTCTCCTCCGGCCTCCACGGACGGCACACCAACCGCCGACATGAACCA 1485 Query 1370 GTAAATCTTGTATTGTTCATG-ATA 1393 |||| |||||||||||||||| ||| Sbjct 1486 GTAA-TCTTGTATTGTTCATGTATA 1509 > AT1G55110.1 | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain 7 | chr1:20560284-20563171 REVERSE LENGTH=1580 Length=1580 Score = 377 bits (204), Expect = 1e-103 Identities = 407/503 (81%), Gaps = 22/503 (4%) Strand=Plus/Plus Query 135 AAGAGGAAGAGAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAGTCATCG-CTCTATC 193 |||||||||||||||| || ||||||||||| ||||| |||||||| || | || |||| Sbjct 277 AAGAGGAAGAGAAATCAACCAGGAAATCCAGACCCAGAAGCAGAAGTGATGGCCT-TATC 335 Query 194 GCCAAACTCCCTCATGGCGACAAATC-GATTCATATGCGAGATTTGCAACAAAGGGTTT- 251 ||||| | || ||||||||||| | |||||||||| ||| | ||||||||||| ||| Sbjct 336 ACCAAAGACACTAATGGCGACAAA-CAGATTCATATGTGAGGTCTGCAACAAAGGTTTTC 394 Query 252 AAGAGAGACCAGAACCTT-CAGCTTCACCGGAGAGGCCATAACCTTCCATGGAAGC-TAA 309 || |||||||| || ||| || |||||| |||||| ||||| || || ||||||| ||| Sbjct 395 AA-AGAGACCA-AAACTTGCAACTTCACAAGAGAGGACATAATCTACCGTGGAAGCTTAA 452 Query 310 AGCAAAGGA-CAAACAAGGA-GCAAGTGAAGAAAAAAGTGTACATCTGTCCAGAG-AAGA 366 | |||| || ||||||| || | || | ||| ||||| || | ||||||||| || Sbjct 453 A-CAAA-GATCAAACAAAGATG-TGGTTAGGAAGAAAGTTTATGTTTGTCCAGAGCCAG- 508 Query 367 GCTGCGTACACCATGACCCGGCCCGAGCCCTCGGTGACTTAACCGGAATCAAGAAGCATT 426 |||| || || || | || | |||| || |||||||||||||||||||||||||||| Sbjct 509 GCTGTGTCCATCACCATCCATCGAGAGCTCTTGGTGACTTAACCGGAATCAAGAAGCATT 568 Query 427 TCAGCAGAAAACATGGTGAGAA-AAAGTGGAAATGTGACAAGTGTTCCAAGAAATATGCT 485 || |||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||| Sbjct 569 TCTTCAGAAAACATGGCGAGAAGAAA-TGGAAATGTGAAAAGTGTTCCAAGAAATATGCG 627 Query 486 GT-CATGTCCGATTGGAAAGCTCATAGC-AAGATTTGTGGTACTAGAGAATACAGATGTG 543 || || || |||||||| |||||| || |||| |||||| |||| |||||||| ||| | Sbjct 628 GTGCAA-TCAGATTGGAAGGCTCAT-GCTAAGACTTGTGGCACTAAAGAATACAAATGCG 685 Query 544 ACTGTGGTACCCTCTTTTCCAGGAAAGATAGTTTCATCACACATAGAGCATTCTGTGACG 603 ||||||| || |||||||| |||| ||||||||||| || ||||||||||| || || | Sbjct 686 ACTGTGGAACTCTCTTTTCTAGGAGGGATAGTTTCATAACTCATAGAGCATTTTGCGATG 745 Query 604 CCTTAGCTGAAGAGAATGCTAGA 626 | ||||| ||||||| ||| ||| Sbjct 746 CATTAGCAGAAGAGAGTGCAAGA 768 > AT5G03150.1 | Symbols: JKD | C2H2-like zinc finger protein | chr5:745644-749007 FORWARD LENGTH=2046 Length=2046 Score = 374 bits (202), Expect = 2e-102 Identities = 432/540 (80%), Gaps = 27/540 (5%) Strand=Plus/Plus Query 89 CCCAAATCCTAACCCTAACCCTAAT-C-ATACC-TCCTC-TAACTCAGCCAAGAGGAAGA 144 ||| ||| ||||||||||||| ||| | | ||| ||| | | |||||||||| ||||| Sbjct 313 CCCTAATTCTAACCCTAACCCAAATGCGAAACCAAACTCTTCA-TCAGCCAAGAAGAAGA 371 Query 145 GAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAGTCATCGCTCTATCGCCAAAC-TCC 203 |||||| || || | ||||||||||||||| || ||||||||||||||||| ||| | Sbjct 372 GAAATCAACCTGGCACTCCAGATCCAGATGCTGATGTCATCGCTCTATCGCC-AACAACA 430 Query 204 CTCATGGCGACAAATC-GATTCATATGCGAGATTTGCAACAAAGGGTTT-AAGAGAGACC 261 |||||||| ||||| | ||||| | |||||||| ||||||||||||||| || || |||| Sbjct 431 CTCATGGCAACAAA-CAGATTCGTGTGCGAGATCTGCAACAAAGGGTTTCAA-AGGGACC 488 Query 262 AGAACCTT-CAGCTTCACCGGAGAGGCCATAACCTTCCATGGAAGCTAAAGCAAAGG-AC 319 |||| || || || || || | ||||| |||||||||||||||||||||||| || | Sbjct 489 AGAA-TTTACAACTACATCGCCGTGGCCACAACCTTCCATGGAAGCTAAAGCAACGGTCC 547 Query 320 AAACAAGGAGCAAGTGAAGAAAAAAGTGTACATCTGTCCAGA-GAAGAGC-TGCGTACAC 377 ||||||| || | | ||||| ||||| ||||| ||||| | |||| | || |||||| Sbjct 548 AAACAAGAAGTGA-TAAAGAAGAAAGTATACATATGTCC-TATCAAGA-CTTGTGTACAC 604 Query 378 CATGA-CCCGGCCCGAGCCCTCGGTGACTTAACCGGAATCAAGAAGCATTTCAGCAGAAA 436 ||||| || || | ||||| || ||| | || || |||||||| || | |||| | || Sbjct 605 CATGATGCC-TCCAGGGCCCTTGGAGACCTCACTGGGATCAAGAAACACTACAGCCGCAA 663 Query 437 ACATGGTGAGAAA-AAGTGGAAATGTGACAAGTGTTCCAAGAAATATGCTG-TCATGTCC 494 ||| ||||| ||| |||||||| ||||| |||||||| |||||||| |||| ||| ||| Sbjct 664 ACACGGTGA-AAAGAAGTGGAAGTGTGAAAAGTGTTCTAAGAAATACGCTGTTCA-GTCT 721 Query 495 GATTGGAAAGCTCATAGC-AAGATTTGTGGTACTAGAGAATACAGATGTGACTGTGGTAC 553 |||||||| || ||| || || | |||||||||| | || || | |||||||||||| || Sbjct 722 GATTGGAAGGCACAT-GCGAAAACTTGTGGTACTCGTGAGTATAAATGTGACTGTGGCAC 780 Query 554 CCTCTTTTCCAGGAAAGATAGTTTCATCACACATAGAGCATTCTGTGACGCCTTAGCTGA 613 | || |||||||||||||||||||||||||||||||| ||||| ||||| ||| |||| Sbjct 781 GTTGTTCTCCAGGAAAGATAGTTTCATCACACATAGAGCGTTCTGCGACGCATTAACTGA 840 > AT3G13810.2 | Symbols: IDD11 | indeterminate(ID)-domain 11 | chr3:4544364-4547513 FORWARD LENGTH=1898 Length=1898 Score = 372 bits (201), Expect = 6e-102 Identities = 393/483 (81%), Gaps = 23/483 (5%) Strand=Plus/Plus Query 156 GGAAATCCAG-ATCCAG-ATGCAGAAGTCATCGCTCTATCGCCAAACTCCCTCATGGCGA 213 |||||| | | | |||| || ||||||| || |||||||| ||||| | || ||||| | Sbjct 371 GGAAATTCTGTACCCAGAAT-CAGAAGTGATAGCTCTATCACCAAAAACACTAATGGCAA 429 Query 214 CAAATC-GATTCATATGCGAGATTTGCAACAAAGGGTTT-AAGAGAGACCAGAACCTTCA 271 |||| | ||||| | || || || ||||||||||| ||| || ||||||||||| || || Sbjct 430 CAAA-CAGATTCGTGTGTGAAATCTGCAACAAAGGTTTTCAA-AGAGACCAGAATCTACA 487 Query 272 GCTTCACCGGAGAGGCCATAACCTTCCATGGAAGCT-AAAGCAAAGGA-CAAACAAGGAG 329 |||||| | ||||| || || || ||||||||||| ||| |||| || | ||||| || Sbjct 488 GCTTCATAGAAGAGGTCACAATCTGCCATGGAAGCTGAAA-CAAA-GATCCAACAA--AG 543 Query 330 CAAGTG--AA-GAAAAAAGTGTACATCTGTCCAG-AGAAGAGCTGCGTACACCATGACCC 385 ||||| || ||| |||||||| | ||||||| || | ||||| || |||||||| || Sbjct 544 -AAGTGATAAGGAAGAAAGTGTATGTATGTCCAGAAGCA-AGCTGTGTCCACCATGATCC 601 Query 386 GGCCCGAGCCCTCGGTGACTTAACCGGAATCAAGAAGCATTTCAGCAGAAAACATGGTGA 445 | |||| ||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 602 ATCTAGAGCTCTCGGTGACTTAACCGGAATCAAGAAGCATTTCTGTAGAAAACATGGTGA 661 Query 446 GAAAAAGTGGAAATGTGACAAGTGTTCCAAGAAATATGCTGT-CATGTCCGATTGGAAAG 504 ||| |||||||||||||| |||||||| |||||||||||||| || || ||||| || | Sbjct 662 GAAGAAGTGGAAATGTGATAAGTGTTCAAAGAAATATGCTGTTCAA-TCAGATTGCAAGG 720 Query 505 CTCATAGC-AAGATTTGTGGTACTAGAGAATACAGATGTGACTGTGGTACCCTCTTTTCC 563 ||||| | |||| |||||| || | ||||||||||||||||||||| || |||||||| Sbjct 721 CTCATT-CTAAGACTTGTGGCACCAAAGAATACAGATGTGACTGTGGCACTCTCTTTTCT 779 Query 564 AGGAAAGATAGTTTCATCACACATAGAGCATTCTGTGACGCCTTAGCTGAAGAGAATGCT 623 |||| ||||||||||| || ||||||||||| ||||| || || |||||||||| ||| Sbjct 780 AGGAGGGATAGTTTCATAACTCATAGAGCATTTTGTGAAGCATTGGCTGAAGAGACTGCA 839 Query 624 AGA 626 ||| Sbjct 840 AGA 842 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68624145015 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5