BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937238 Length=1488 Score E Sequences producing significant alignments: (Bits) Value AT3G45620.2 | Symbols: | Transducin/WD40 repeat-like superfami... 2109 0.0 > AT3G45620.2 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:16745882-16748156 FORWARD LENGTH=1747 Length=1747 Score = 2109 bits (1142), Expect = 0.0 Identities = 1283/1352 (95%), Gaps = 6/1352 (0%) Strand=Plus/Plus Query 140 GGGATAGTGAAGAAACTCGATCTTTACGGGAAGTTAAATGGTCACGAGGGGTGTGTGAAT 199 |||| |||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| Sbjct 256 GGGAGAGTGAAGAAACTAGATCTTTACGGGAAGTTAAATGGTCATGAGGGATGTGTGAAT 315 Query 200 GCCGTGGAGTTCAATTCGAGTGGCGATGTTCTTGTTTCGGGGTCCGATGATCGACAAATC 259 || |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 316 GCAGTGGAGTTCAATTCGACTGGCGATGTTCTTGTTTCCGGGTCCGATGATCGACAAATC 375 Query 260 ATGCTCTGGAACTGGTTGAGTGGAAGCAGGACA-TTGTCGTATCCCTCTGGACATTGTGA 318 ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| Sbjct 376 ATGCTCTGGAACTGGTTGAGTGGAAGCAGGA-AGTTGTCGTATCCCTCTGGCCATTGTGA 434 Query 319 AAATGTGTTTCAGACTAAGTTCATACCTTTTACGGATGACCGGACAATCATAACATCTGG 378 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 435 AAATGTGTTTCAGACTAAGTTCATACCTTTTACGGATGACAGGACAATCATAACATCTGG 494 Query 379 TGCTGATGGACAAGTAAGACTTGGTCAGATCCTAGAAAATGGTAAAGTGGAGACAAAAAG 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 495 TGCTGATGGACAAGTAAGACTTGGTCAGATCCTAGAAAATGGTAAAGTGGAGACGAAAAG 554 Query 439 ACTAGGGAGGCATCACGGTCGCGTGTACAAGCTTGCTGTATTGCCTGGAGATCCTAATGT 498 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 555 ACTAGGGAGGCATCACGGTCGCGTGTACAAGCTTGCTGTTTTGCCTGGAGATCCTAACGT 614 Query 499 ATTCTACAGCTGTGGTGAAGATGGGTTTGTTCAACATTTTGATATACGAAGCAATAGTGC 558 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 615 ATTCTACAGCTGTGGTGAAGATGGTTTTGTTCAACATTTTGATATACGCAGCAACAGTGC 674 Query 559 CACTATGGTTTTGTATTCCTCTCCGTTCACACAAGGCTGCAGGAGACATCACTCCAGCAG 618 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 675 TACTATGGTTTTGTATTCCTCTCCGTTCACACAAGGATGCAGGAGACATCACTCCAGCAG 734 Query 619 TAGGATAAGATTGAATTCTATTGCGATAGATCCGAGGAATTCATATTATCTTGCAGTTGG 678 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 735 TAGGATCAGATTGAATTCTATTGCGATAGATCCGAGGAATTCATATTATCTTGCGGTTGG 794 Query 679 GGGTTCTGATGAATATGCACGAGTCTATGACACTAGAAGAGGACAATTAGCTCCAGTATG 738 ||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| Sbjct 795 GGGTTCTGATGAATATGCACGAGTCTACGATACTAGAAGAGTACAATTAGCTCCAGTATG 854 Query 739 TCGCCATGTGTTACCAGATGCGCCTGTGAACACTTTCTGTCCTCGTCATCTCCGGGAAAC 798 |||||| || |||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 855 TCGCCACGTCTTACCAGACGCTCCTGTGAACACTTTCTGTCCTCGTCATCTCCGGGAAAC 914 Query 799 CAACAGTGTTCACGTCACAGGTTTGGCATATTCCAAAGCTGGAGAACTGCTGGTCTCTTA 858 ||||||||||||| |||| || || ||||||||||||||||||||||| |||||||||| Sbjct 915 CAACAGTGTTCACATCACGGGATTAGCATATTCCAAAGCTGGAGAACTATTGGTCTCTTA 974 Query 859 CAACGACGAGCTCATTTATCTGTTTGAGAAGAACATGGGTTATGGTCCGTCGCCGGTTTC 918 |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 975 CAACGACGAGCTTATTTATCTGTTTGAGAAGAACATGGGTTATGGTTCGTCGCCTGTTTC 1034 Query 919 TATCTCTCCTGAGAAACTGCAAGTAATGGAAGAACCACAGGTGTATACAGGTCACCGCAA 978 | ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1035 TGTCTCTCCTGAGAAACTGCAAGAAATGGAAGAACCACAGGTGTATATAGGTCACCGCAA 1094 Query 979 TGCACAAACAGTGAAGGGAGTGAAATT-TTTCGGTCCAAATGATGAATATGTGACGAGTG 1037 ||||||||||||||| |||||||| || ||| |||||||||||||||||||| ||||||| Sbjct 1095 TGCACAAACAGTGAAAGGAGTGAACTTCTTT-GGTCCAAATGATGAATATGTCACGAGTG 1153 Query 1038 GTTCAGACTGCGGTCACATCTTTATATGGAAGAAGAAAGGGGGTAAGCTTGTTCGGGCTA 1097 ||||||||||||||||||| |||||||||||||||||||| ||||||||||| || |||| Sbjct 1154 GTTCAGACTGCGGTCACATTTTTATATGGAAGAAGAAAGGAGGTAAGCTTGTCCGAGCTA 1213 Query 1098 TGGTGGGTGATAGACGAGTGGTGAATCAGCTAGAGTCTCACCCACACATACCGTTACTTG 1157 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1214 TGGTGGGTGATAGACGAGTGGTGAATCAGTTAGAGTCTCACCCACACATACCGTTACTTG 1273 Query 1158 CATCTTGCGGGATTGAAAAGAGCGTTAAGCTCTGGACGCCTATGTCAAACGAAGTTCTTT 1217 |||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||| Sbjct 1274 CATCCTGCGGGATTGAAAAGAGCGTTAAGCTCTGGACGCCAATGTCAAATGATGTTCTTT 1333 Query 1218 CCCTGCCTGAAAAGATCGAAAAGGTGATGGAATTGAACAGGGTGGGGAGAGAAGACCAGT 1277 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 1334 CCCTGCCTGAAAAGATCGATAAGGTGATGGAATTGAACAGGGTGGGGAGAGAAGACCAAT 1393 Query 1278 CGAGGGTGACACTGACTCCTGATGTAATTATGCATGTTCTCCGGCTACAGAGACGTCAGA 1337 ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1394 CGAGGGTAACACTGACTCCTGATGTAATTATGCATGTTCTTAGGCTACAGAGACGTCAGA 1453 Query 1338 CGTCGGCTTTCACAGAGAGAAGATACGTTTCAACTGATATTGGCAGTGATGAAGGAAATG 1397 |||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 1454 CGTCGGCTTTTACAGAGAGGAGATACGTTTCAACTGACATTGGCAGTGATGAAGGAAATG 1513 Query 1398 ACGCTCACTTCATTGCAAGCTTAGTAGCCAACGACGATGAGTCTTCAGAAAGAGAATGTA 1457 | |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1514 ATGCTCGCTTCATTGCAAGCTTAGTAGCCAACGACGATGAGTCTTCAGACAGAGAATGTA 1573 Query 1458 CGGTAAGCTGAGTC-T-TAAACTAGTGTAATA 1487 | |||||||||||| | | ||||||||||||| Sbjct 1574 CTGTAAGCTGAGTCCTCTCAACTAGTGTAATA 1605 Score = 241 bits (130), Expect = 2e-62 Identities = 137/140 (98%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 1 GTAAAGACTTTGAACTT-AAACAATGGCGAGACCGAGACGAAGAAACACAGAGATCGGTG 59 |||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 15 GTAAAGAC-TTGAACTTAAAACCATGGCGAGACCGAGACGAAGAAACACAGAGATCGGTG 73 Query 60 ATGGCTTCACAGAGATATTCAACAGAGAGATTGGTTTCTCTCATCCAATCACCATCTCTC 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 74 ATGGCTTCACAGAGATATTCAACAGAGAGATTGGTTTCTCTCATCCAATCACCATCTCTC 133 Query 120 GTCGAATCTCCGCTTCTGAG 139 |||||||||||||||||||| Sbjct 134 GTCGAATCTCCGCTTCTGAG 153 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73393196790 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5