BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937251
Length=463
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44160.1 | Symbols: MTHFR2 | methylenetetrahydrofolate reduc... 673 0.0
> AT2G44160.1 | Symbols: MTHFR2 | methylenetetrahydrofolate reductase
2 | chr2:18262210-18265346 FORWARD LENGTH=2037
Length=2037
Score = 673 bits (364), Expect = 0.0
Identities = 403/422 (95%), Gaps = 2/422 (0%)
Strand=Plus/Plus
Query 43 ATGGACTCCTA-CCAGAGACAAAGATAATAAACGATCAACTGGTAAAAATCAACTCCAAA 101
||||||||| | |||||||||| |||||||||||| |||||| ||||| |||||||||||
Sbjct 1335 ATGGACTCC-AGCCAGAGACAAGGATAATAAACGAGCAACTGATAAAAGTCAACTCCAAA 1393
Query 102 GGCTTCTTGACCATCAACAGCCAACCATCAGTCAACGCCGAGAGATCTGATTCCCCAACT 161
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 GGCTTCTTGACCATCAATAGCCAACCATCAGTCAACGCCGAGAGATCTGATTCCCCAACT 1453
Query 162 GTTGGGTGGGGAGGTCCTGTTGCATATGTATACCAAAAGGCTTATCTAGAGTTCTTCTGC 221
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1454 GTTGGATGGGGAGGTCCTGTTGGATATGTATACCAAAAGGCTTATCTAGAGTTCTTCTGC 1513
Query 222 TCAAAGGAGAAATTAGATGCAGTGGTGGAGAAATGCAAAGCTTTGCCATCGATTACTTAC 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 TCAAAGGAGAAATTAGATGCAGTGGTGGAGAAATGCAAAGCTTTGCCATCGATTACTTAC 1573
Query 282 ATGGCTGTGAACAAAGGAGAAAACTGGGTATCGAACACTGCCCAATCTGATGTGAATGCT 341
||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||
Sbjct 1574 ATGGCTGTGAACAAAGGAGAACAGTGGGTATCGAACACTGCCCAAGCTGATGTGAATGCT 1633
Query 342 GTTACATGGGGAGTTTTCCCGGCTAAGGAAATCATTCAACCAACCATTGTCGATCTCGCT 401
|| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1634 GTAACTTGGGGAGTTTTCCCGGCTAAGGAAATCATTCAACCAACCATTGTCGATCCCGCT 1693
Query 402 AGCTTCAAAGTCTGGAAGGATGAAGCATTTGGGACTTGGTGAAGAAGCTAGGCTAACTTG 461
|||||||| |||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 1694 AGCTTCAACGTCTGGAAGGATGAAGCATTTGAGACTTGGTCAAGAAGCTGGGCTAACTTG 1753
Query 462 TA 463
||
Sbjct 1754 TA 1755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22067541811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5