BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937371 Length=1810 Score E Sequences producing significant alignments: (Bits) Value AT3G46600.1 | Symbols: | GRAS family transcription factor | ch... 2754 0.0 AT5G59450.1 | Symbols: | GRAS family transcription factor | ch... 771 0.0 > AT3G46600.1 | Symbols: | GRAS family transcription factor | chr3:17157924-17159965 FORWARD LENGTH=2042 Length=2042 Score = 2754 bits (1491), Expect = 0.0 Identities = 1709/1813 (94%), Gaps = 20/1813 (1%) Strand=Plus/Plus Query 1 TTCTAGTGAGATTCTGTTTCATGGATGCTATTTTGCCAGTACCTGTTGATGGGTTCAGAT 60 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 105 TTCTAGAGAGATTCTGTTTCATGGATGCTATTTTGCCAGTACCCGTTGATGGGTTCAGAT 164 Query 61 TCGACAACGGTTCTGGATCTTGTTGCAAACCAAGGAACAATCTTGAATCTGGTACTACCA 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||| || |||| Sbjct 165 TCGACACCGGTTCTGGATCTTGTTGCAAACCGAGGAACAATCTTGAATCTGGGACGACCA 224 Query 121 ATCGTTTCACTTGTTTCAACGAATCTGAATCTCAGAGCAACCCTTCTCCGACCGAGTCTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 ATCGTTTCACTTGTTTCAACGAATCTGAATCTCAGAGCAACCCTTCTCCGACCGAGTCTA 284 Query 181 AGGTATGTTCAGATTACCTCCCTGTCTTTAAGTACATCAATGACATGTTGATGGAAGAAG 240 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 285 AGGTATGTTCAGATTACCTTCCTGTCTTTAAGTACATCAATGACATGTTGATGGAAGAAG 344 Query 241 ATCTTGAAGGACAGTCTTGTATGTTGGAAGACAGTTTGGCTTTACAAGCCGCTGAGAGAT 300 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 345 ATCTTGAAGGTCAGTCTTGTATGTTGGAAGACAGTTTGGCTTTACAAGCCGCAGAGAGAT 404 Query 301 CTTTCTAT-GAAGTACTTCAGGATCAAACTCCTCCACCGTCTGATCAAATCTCTGGTGAT 359 |||||| | ||||| ||||| |||| || | | || | |||||| |||||| Sbjct 405 CTTTCT-TCGAAGTGCTTCAAGATC-AA-------A-C-TC----C-AATCTCGGGTGAT 448 Query 360 CTAGAGGATGGTTCTCTTGGAAACTTCAGTTCTATAACGAGTTTGCATCAACCTGAAGTT 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 449 CTAGAGGATGGTTCTCTTGGAAACTTCAGTTCTATAACGAGTTTGCATCAACCTGAAGTT 508 Query 420 TCAGAGGAGTCAACCAGAAGGTATCGACACAGGGATGATGATGAAGATGATGATTTTGAG 479 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 509 TCAGAGGAGTCAACCAGAAGGTATCGACATAGGGATGATGATGAAGATGATGATCTTGAG 568 Query 480 GGTGGAAGGAAATCGAAGCTTCCTGCAATATCTACTGTGGATGAGTTAGCAGAGAAGTTT 539 ||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||| Sbjct 569 AGTGGAAGGAAATCGAAGCTCCCTGCGATTTCTACGGTGGATGAGTTAGCAGAGAAGTTT 628 Query 540 GAGGAAGTGTTGTTGGTATGTCAAAAGAATGATCAGGGAGAAGCAACAGAGAAGAAAACA 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 629 GAGGAAGTGTTGTTGGTATGTCAAAAGAATGATCAGGGAGAAGCAACAGAGAAGAAAACA 688 Query 600 AGACAAGCAAAGGGTTCATCGAATCGATCCAAGCAGCAAAAGTCAGATCAGCCAGTGGAT 659 ||||| | ||| || ||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 689 AGACACGTAAAAGGCTCATCGAATCGATACAAGCAGCAAAAGTCAGATCAGCCAGTAGAT 748 Query 660 ATGAGGAACCTTTTGATGCAATGCGCGCAAGCTGTGGCGAGCTTTGACCAGAGAAGAGCT 719 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 749 ATGAGGAATCTTTTGATGCAATGCGCGCAAGCTGTGGCGAGTTTTGACCAGAGAAGAGCT 808 Query 720 TCTGAGAAACTCAAGGAGATAAGAGAACACTCTTCTAGCCACGGCGATGCAACTCAGAGA 779 | ||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||| ||| Sbjct 809 TTTGAGAAACTGAAGGAGATAAGAGAACACTCTTCTCGCCACGGTGATGCGACTCAAAGA 868 Query 780 CTTGGTTATCACTTCGCTGAGGCGCTTGAAGCGCGTATTACTGGAACCATGACTACACCA 839 |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 869 CTTGGTTATCACTTTGCTGAGGCGCTTGAAGCTCGTATTACAGGAACCATGACTACACCA 928 Query 840 ATATCTGCTACTTCTAGTAGAACATCAATGGTGGACATTTTGAAGGCGTACAAGGGGTTT 899 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 929 ATATCTGCTACTTCTAGCAGAACATCAATGGTGGACATTTTGAAGGCGTACAAGGGATTT 988 Query 900 GTTCAGGCTTGTCCCACCTTAATAATGTGTTATTTCACTGCAAACAGAACAATTGTTGAG 959 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 989 GTTCAGGCTTGCCCCACCTTAATAATGTGTTATTTCACTGCAAACAGAACAATCAATGAG 1048 Query 960 CTTGCTTCCAAAGCAACCACACTTCACATCATTGATTTTGGGATCCTCTATGGATTTCAG 1019 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1049 CTTGCTTCCAAAGCAACCACACTTCACATCATTGATTTTGGGATTCTCTATGGATTTCAA 1108 Query 1020 TGGCCTTGTCTGATACAAGCTCTT-TCAAAACGTGACATCGGACCACCACTGCTCCGTGT 1078 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1109 TGGCCTTGTCTGATACAAGCT-TTGTCAAAACGTGACATCGGACCACCACTGCTCCGTGT 1167 Query 1079 GACAGGTATCGAGCTGCCTCAGTCAGGCTTCCGCCCATCAGAGCGGGTAGAAGAGACCGG 1138 ||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1168 GACTGGTATCGAGCTTCCTCAGTCAGGTTTCCGTCCATCAGAGCGGGTAGAAGAGACCGG 1227 Query 1139 GCGAAGACTGAAGAGATTCTGTGACAAGTTCAAAGTCCCGTTTGAGTACAGTTTCATAGC 1198 ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1228 GCGAAGACTAAAGAGGTTCTGTGACAAGTTCAATGTCCCGTTTGAGTACAGTTTCATAGC 1287 Query 1199 CAAAAACTGGGAGAACATAACTCTTGATGATCTGGTGATCAATAGTGGAGAGACAACAGT 1258 ||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1288 CAAGAATTGGGAGAACATAACTCTTGATGATCTGGTGATCAATAGTGGCGAGACAACAGT 1347 Query 1259 TGTCAACTGCATCCTCCGGCTACAATATACGCCTGATGAAACCGTGTCCCTCAACTCACC 1318 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1348 TGTCAACTGCATCCTCCGGCTACAATATACACCTGATGAAACCGTGTCCCTCAACTCACC 1407 Query 1319 AAGAGACACGGCTCTGAAACTATTCAGAGATATCAATCCTGACCTCTTTGTGTTTGCAGC 1378 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1408 GAGAGACACGGCTCTGAAACTATTCAGAGACATCAACCCTGACCTCTTTGTGTTTGCAGA 1467 Query 1379 GATCAACGGGACGTACAATTCGCCCTTCTTCCTAACAAGGTTCAGAGAAGCTCTGTTCCA 1438 ||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1468 GATTAACGGGACTTACAATTCACCCTTCTTCCTAACAAGGTTCAGAGAAGCTCTCTTCCA 1527 Query 1439 TTGCTCATCACTCTTTGACATGTATGAGACCACATTATCAGAAGACGACAATTGCAGGAC 1498 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1528 TTGCTCGTCACTCTTTGACATGTATGAGACCACATTATCAGAAGACGACAATTGCAGGAC 1587 Query 1499 CCTGGTGGAGAGGGAGCTAATCATAAGAGATGCAATGAGTGTGATAGCCTGTGAAGGGTC 1558 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1588 ACTGGTGGAGAGGGAACTAATCATAAGAGATGCAATGAGTGTGATAGCCTGTGAAGGGTC 1647 Query 1559 TGAGCGGTTTGCAAGGCCCGAGACATACAAGCAATGGCAGGTTAGGATTTTAAGAGCCGG 1618 |||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| || Sbjct 1648 TGAGCGGTTTGCAAGGCCAGAGACCTACAAGCAATGGCAGGTTAGGATTCTAAGAGCAGG 1707 Query 1619 GTTTAGACCAGCGAAACTAAACAAACAGATCGTAAAGGACGGGAAAGAAATAGTGAAACA 1678 ||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| | Sbjct 1708 ATTTAGACCAGCGAAACTAAGCAAACAGATAGTAAAGGACGGGAAAGAGATAGTGAAAGA 1767 Query 1679 ACGTTACCACAAAGATTTCGTGATCGACAACGATAACAACTGGATGTTTCAGGGCTGGAA 1738 |||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| Sbjct 1768 ACGTTACCACAAAGATTTTGTGATCGACAATGATAACCACTGGATGTTTCAGGGCTGGAA 1827 Query 1739 AGGAAGAGTCCTCTATGCTGTTTCCTGCTGGAAACCTGCTAAGAAGCAATAAA-CAAATC 1797 |||||||||||| ||||||||||| ||||||||||||||||||||| |||||| || || Sbjct 1828 AGGAAGAGTCCTTTATGCTGTTTCTTGCTGGAAACCTGCTAAGAAGTAATAAAACAGTTC 1887 Query 1798 TGTAGTCATTTGC 1810 |||| |||||||| Sbjct 1888 TGTAATCATTTGC 1900 > AT5G59450.1 | Symbols: | GRAS family transcription factor | chr5:23974668-23976791 FORWARD LENGTH=2124 Length=2124 Score = 771 bits (417), Expect = 0.0 Identities = 917/1151 (80%), Gaps = 64/1151 (6%) Strand=Plus/Plus Query 672 TTGATGCAATGCGCGCAAGCTGTGGCGAGCTTTGACCAGAGAAGAGCTTCTGAGAAACTC 731 |||| |||||| || |||||||| |||||||||||||||||||||||| | || |||||| Sbjct 822 TTGACGCAATGTGCTCAAGCTGTAGCGAGCTTTGACCAGAGAAGAGCTACAGATAAACTC 881 Query 732 AAGGAGATAAGAGAACACTCTTCTAGCCACGGCGATGCAACTCAGAGACTTGGTTATCAC 791 ||||||||||||| ||||||||||||| | || |||| ||| || ||||| | || | || Sbjct 882 AAGGAGATAAGAGCACACTCTTCTAGCAATGGAGATGGAACACAAAGACTAGCTTTTTAC 941 Query 792 TTCGCTGAGGCGCTTGAAGCGCGTATTACTGGAACCATGACT-A-CACC----AAT-ATC 844 || || ||||||||||| || ||||| ||||||| ||| || | | || | ||| Sbjct 942 TTTGCAGAGGCGCTTGAGGCACGTATCACTGGAAACAT--CTCACCGCCTGTTTCTAATC 999 Query 845 TG-CTACTTCTAGTA-GAACATCAATGGTGGACATTTTGAAGGCGTACAAGGGGTTTGTT 902 | | |||| || | | ||||| ||||||||||||||||| ||||||||| ||||||| Sbjct 1000 CGTTTCCTTCAAGCACG-ACATCGATGGTGGACATTTTGAAAGCGTACAAGCTGTTTGTT 1058 Query 903 CAGGCTTGTCCCACCTTA-ATAATGTG-TTATTTCACTGCAAACAGAA-CAATTGT-TGA 958 || ||||||||| | || ||| || ||| ||| |||| |||| || | ||| | || Sbjct 1059 CATACTTGTCCCATC-TATGTAA-CTGATTACTTCGCTGCGAACA-AATCGATT-TACGA 1114 Query 959 GCTTGCT-TCCAAAGCAACCACA-CTTCACATCA-TTGATTTTGGGA-TCCTCTATGGAT 1014 |||||| | |||||||| | | |||||||| | |||||||| ||| | ||||| || | Sbjct 1115 ACTTGCTAT-GAAAGCAACTA-AGCTTCACAT-AGTTGATTTT-GGAGTTCTCTACGGCT 1170 Query 1015 TTCAGTGGCCTTGTCTGATACAAGCTCTTTCAAAACGTGA-C-ATCGGACCACCACTGCT 1072 |||| ||||||||| || ||| |||||| || |||| || | |||||||||| |||| Sbjct 1171 TTCAATGGCCTTGTTTGTTACGAGCTCTGTCTAAAC--GACCGGGCGGACCACCAATGCT 1228 Query 1073 CCGTGTGACAGGTATCGAGCTGCCTC-AGTCAGGCTTCCGCCCATCAGAGCGGGTAGAAG 1131 || ||||| || ||||||||||| | || | || || || || ||||| || || |||| Sbjct 1229 TCGGGTGACTGGAATCGAGCTGCCACAAG-CGGGTTTTCGTCCTTCAGACCGCGTTGAAG 1287 Query 1132 AGACCGGGCGAAGACTGAAGAGATTCTGTGA-CAAGTTCAAAGTCCCGTTTGAGTACAGT 1190 |||| || ||||||||||| || ||||| || | |||| || || || ||||||| || Sbjct 1288 AGACTGGTCGAAGACTGAAAAGGTTCTGCGATC-AGTTTAATGTTCCTTTTGAGTTCAAC 1346 Query 1191 TTCATAGCCAAAAACTGGGAGAA-CATAACTCTTGATGATCTGGTGATCAATAGTGGAGA 1249 |||||||||||||| ||||| || ||| ||||||||||| || |||||||| ||||| Sbjct 1347 TTCATAGCCAAAAAATGGGA-AACCATCACTCTTGATGAACTTATGATCAATCCAGGAGA 1405 Query 1250 GACAACAGTTGTCAACTGCA-TCCTCCGGCTACAATATACGCCTGATGAAACCGTGTCCC 1308 |||||| || |||||||||| || | ||| ||||||| || ||||||||||| |||| | Sbjct 1406 GACAACGGTCGTCAACTGCATTCAT-CGGTTACAATACACTCCTGATGAAACTGTGT-CA 1463 Query 1309 TCA-ACTCACCAAGAGACACGGCTCTGAAACTATTCAGAGATATCAATCCTGACCTCTTT 1367 | | |||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 1464 TTAGACTCTCCAAGAGACACGGTTCTGAAGCTATTCAGAGATATCAATCCTGACCTCTTT 1523 Query 1368 GTGTTTGCAGCGATCAACGGGACGTACAATTCGCCCTTCTTCCTAACAAGGTTCAGAGAA 1427 |||||||||| ||| ||||| | |||||| || || |||||| | || |||||| ||||| Sbjct 1524 GTGTTTGCAGAGATTAACGGAATGTACAACTCTCCTTTCTTCATGACGAGGTTCCGAGAA 1583 Query 1428 GCTCTGTTCCATTGCTCATCACTCTTTGACATGTATGAGACCACATTATCA-G-A-AG-A 1483 || || || |||| ||| |||||||||||||||| ||| |||||| || || | | || | Sbjct 1584 GCGCTTTTTCATTACTCTTCACTCTTTGACATGTTTGACACCACAATA-CACGCAGAGGA 1642 Query 1484 CGA---CAATTGCAGGACCCTGGTGGAGAGGGAGCTAATCATAAGAGATGCAATGAGTGT 1540 || ||| |||| | ||| ||||||| ||| || | | ||||| || ||||| || Sbjct 1643 TGAGTACAAAAACAGGTCACTGTTGGAGAGAGAGTTACTTGTGAGAGACGCGATGAGCGT 1702 Query 1541 GATAGCCTGTGAAGGGT-CTGAGCGGTTTGCAAGGCCCGAGACATACAAGCAATGGC-AG 1598 ||| |||| || |||| | ||||||||||| ||||| || || ||||||||||||| || Sbjct 1703 GATTTCCTGCGA-GGGTGCAGAGCGGTTTGCGAGGCCTGAAACCTACAAGCAATGGCGAG 1761 Query 1599 GTTAGGATTTTAAGAGCCGGGTTTA-GACCAGCGAAACTAA-A-CAAACAGATCGTAAAG 1655 |||||||||| ||||||||||||| | ||||| || ||| | |||||||||| | ||| Sbjct 1762 -TTAGGATTTTGAGAGCCGGGTTTAAG-CCAGC-AA-CTATTAGCAAACAGATCATGAAG 1817 Query 1656 GACGGGAAAG-AAATAGTGAA-ACAACGTTACCACAAAGATTTCGTGATCGACAACGATA 1713 || || ||| |||| |||| | |||||||||| | |||||| |||||||| | ||||| Sbjct 1818 GA-GGCTAAGGAAATTGTGAGGA-AACGTTACCATAGAGATTTTGTGATCGATAGCGATA 1875 Query 1714 ACAACTGGATGTTTCAGGGCTGGAAAGGAAGAGTCCTCTATGCTGTTTCCTGCTGGAAAC 1773 |||| |||||| |||| || ||||||||||||||| |||||||| |||| |||||||||| Sbjct 1876 ACAATTGGATGCTTCAAGGATGGAAAGGAAGAGTCATCTATGCTTTTTCTTGCTGGAAAC 1935 Query 1774 CTGCTAAGAAG 1784 ||||| ||||| Sbjct 1936 CTGCTGAGAAG 1946 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89557772280 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5