BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937417
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39330.1 | Symbols: JAL23 | jacalin-related lectin 23 | chr2... 390 7e-108
AT2G39310.1 | Symbols: JAL22 | jacalin-related lectin 22 | chr2... 289 3e-77
> AT2G39330.1 | Symbols: JAL23 | jacalin-related lectin 23 | chr2:16419596-16421852
REVERSE LENGTH=1619
Length=1619
Score = 390 bits (211), Expect = 7e-108
Identities = 255/276 (92%), Gaps = 4/276 (1%)
Strand=Plus/Plus
Query 330 TTTGTGCTTGAAGATGGTGAATATCTAACAGCCATAGATGGCT-TCTACGATAAGATTTT 388
|||||||||||||||||||||||||| || ||||||||||||| | ||||||||||||||
Sbjct 1174 TTTGTGCTTGAAGATGGTGAATATCTCACGGCCATAGATGGCTAT-TACGATAAGATTTT 1232
Query 389 CGGAGTCGAGACACCGATGATAATCTGTCTTCAGTTTAAGACGAATAAAAGGGAGTCAAC 448
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1233 CGGAGTCGAGACACCAATGATTATCTGTCTTCAGTTTAAGACGAACAAAAGGGAGTCAAC 1292
Query 449 TCCGTTTGGAATGGACTCCGGTGAGAAGTTCTCAATCGGAGAGATAGGCCACAAGATCGT 508
||| || |||||||| || |||||||||||||| | ||||||| |||||||||||||||
Sbjct 1293 TCCATTCGGAATGGATTCGGGTGAGAAGTTCTCGCTTGGAGAGAAAGGCCACAAGATCGT 1352
Query 509 CGGATGCCACGGACAAGCTAGTGATGTTGTTCACAGCATCGGAGTCACTGTCGTGCCAAT 568
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1353 CGGATTCCACGGACAAGCTAGTGATGTTGTTCACAGCATCGGAGTCACTGTCGTGCCCAT 1412
Query 569 CACCA-CAACCAAGTGAAAAACCTTCTATTATATAA 603
|||| || |||||||||||||||| ||||||||||
Sbjct 1413 TACCAACA-CCAAGTGAAAAACCTTTTATTATATAA 1447
Score = 296 bits (160), Expect = 2e-79
Identities = 186/199 (93%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 131 GAAGGGGAAAACATCATTCTCTGGATATAAGGGTGGTAAGAAGTTTAAGCTAGAGCAGAA 190
|||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 822 GAAGGGGAGAACGTCATTCTCTGGGTATAAGGGAGGTAAGAAGTTTAAGCTAGAGCAAAA 881
Query 191 GGGTCGCAAGCTTGTCGGGTTCCATGGAAAGGAAGGTTCAGCTATTGATGCTCTTGGAGC 250
|||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 882 GGGTCGTAGGCTTGTCGGGTTCCATGGAAAGGAAGGTTCAGCTATTGATGCCCTTGGAGC 941
Query 251 ATATTTTGGACATATTCCTACTCCGACTCCTATAATTGCAGCCAAGAAACTACCAGCAAT 310
|||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 942 ATATTTTGCACCTATTCCTACTCCGACTCCTATAATTCCAGCCAAGAAACTACCAGCAAT 1001
Query 311 AGGTGGCAACGGAGGAGTT 329
||| |||| ||||||||||
Sbjct 1002 AGGCGGCAGCGGAGGAGTT 1020
Score = 180 bits (97), Expect = 2e-44
Identities = 103/106 (97%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 29 TATTGGTCAAGATAATTCTCGTATAACTTATTTAGAGTTCGAGTACGAGAAAGGCGGTAA 88
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 612 TATTGGTCAAGATAATTCTCGTATTACTTATTTAGAGTTCGAGTACGAGAAAGGCGGTAA 671
Query 89 GTTAGAGACACGTCACCATGGGGTGAAACAAGAAAGATCACTGAAG 134
|||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 672 GTTAGAGACATGTCGCCATGGGGTGAAACAAGAAAGATCACTGAAG 717
> AT2G39310.1 | Symbols: JAL22 | jacalin-related lectin 22 | chr2:16414073-16416815
REVERSE LENGTH=1610
Length=1610
Score = 289 bits (156), Expect = 3e-77
Identities = 229/263 (87%), Gaps = 10/263 (4%)
Strand=Plus/Plus
Query 330 TTTGTGCTTGAAGATGGTGAATATCTAACA-G-CCATAGATGGCTTCTACGATAAGATTT 387
|||||||||||||||||||||||||| || | ||||||||||| |||||||||||| |
Sbjct 1167 TTTGTGCTTGAAGATGGTGAATATCT--CATGAACATAGATGGCTACTACGATAAGATCT 1224
Query 388 TCGGAGTCGA-GACACCGATGATAATCTGTCTTCAGTTTAAGACGAATAAAAGGGAGTCA 446
||||||| || || ||| || || | ||||||||||||||||| || ||||||||||||
Sbjct 1225 TCGGAGTTGAGGA-ACCAATAATTGTATGTCTTCAGTTTAAGACCAACAAAAGGGAGTCA 1283
Query 447 ACT-CCGTTTGGAATGGACTCCGGTGAGAAGTTCTCAATCGGAGA-GATAGGCCACAAGA 504
| | |||||||||||||| || ||| |||||||||| | ||||| || |||||||||||
Sbjct 1284 A-TGCCGTTTGGAATGGATTCTGGTAAGAAGTTCTCGCTTGGAGAGGA-AGGCCACAAGA 1341
Query 505 TCGTCGGATGCCACGGACAAGCTAGTGATGTTGTTCACAGCATCGGAGTCACTGTCGTGC 564
|||| |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1342 TCGTTGGATTCCATGGACAAGCTAGTGATGTTGTTCACAGCATCGGAGTCACTATCGTGC 1401
Query 565 CAATCACCACAACCAAGTGAAAA 587
| |||||||| ||| ||||||||
Sbjct 1402 CCATCACCACCACCGAGTGAAAA 1424
Score = 211 bits (114), Expect = 6e-54
Identities = 172/200 (86%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 132 AAGGGGAAAACATCATTCTCTGGATATAAGGGT-GGTAAGAAGTTTAAGCTAGAGCAGAA 190
||||||| ||||||||||| ||| ||||| || |||||||||||| | | ||||| ||
Sbjct 816 AAGGGGAGAACATCATTCTTTGGGTATAA-TGTGGGTAAGAAGTTTGTGTTGGAGCAAAA 874
Query 191 GGGTCGCAAGCTTGTCGGGTTCCATGGAAAGGAAGGTTCAGCTATTGATGCTCTTGGAGC 250
||||| | |||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 875 GGGTCATAGGCTTGTCGGGTTCCATGGAAAGGAAGATGCAGCTATTGATGCTCTTGGAGC 934
Query 251 ATATTTTGGACATATTCCTACTCCGACTCC-TATAATTGCAGCCAAGAAACTACCAGCAA 309
||||||||||| | |||||||||| ||||| | | ||| || | |||||||||||||| |
Sbjct 935 ATATTTTGGACCTGTTCCTACTCCTACTCCCT-TGATTCCATCTAAGAAACTACCAGCGA 993
Query 310 TAGGTGGCAACGGAGGAGTT 329
|||| ||||||| |||||||
Sbjct 994 TAGGCGGCAACGAAGGAGTT 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29085571113
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5