BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937580
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48240.1 | Symbols: | Octicosapeptide/Phox/Bem1p family pro... 857 0.0
AT5G63130.1 | Symbols: | Octicosapeptide/Phox/Bem1p family pro... 261 5e-69
> AT3G48240.1 | Symbols: | Octicosapeptide/Phox/Bem1p family protein
| chr3:17867316-17868387 FORWARD LENGTH=988
Length=988
Score = 857 bits (464), Expect = 0.0
Identities = 547/587 (93%), Gaps = 6/587 (1%)
Strand=Plus/Plus
Query 1 GAAACCTAGAAGCTTCTAAAAATGGTGGCCGTAGCTGAGAATCAGAAAACGAAGAACAGT 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 45 GAAACCTAGAAGCTTCTAACAATGGTGGCCGTAGCTGAGAATCAGAAAACGAAGAACAGT 104
Query 61 CTCAAGTTCCTCTGCAGTTACGGTGGCAGAATCCTCCCTCGTTCTATCGATGGAAATCTC 120
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 105 CTCAAGTTCCTCTGCAGTTACGGCGGAAGAATCCTCCCTCGTTCTATCGATGGAAAGCTC 164
Query 121 CGTTACGTCGGCGGTTTCACCAGAGTACTCTCCGTTCATCACTCAATCTCTTTCACAGAA 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 165 CGTTACGTCGGCGGTTTCACCAGAGTACTCTCCGTTCATCACTCTATCTCTTTCACAGAA 224
Query 181 TTGATGATGAAATTGGAGGAATTTTGTGGCTATTCCGTTGAATTGAAGTGTCAATTACCA 240
|||| |||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 225 TTGACGATGAAGTTGGAGGAATTTTGTGGATACTCCGTTGAATTGAAGTGTCAATTACCA 284
Query 241 AACGGAGATCTGGAGACACTAATTTCCGTCAAGTCAGATGAGGATCTAGCGAATATGGTT 300
|| |||||||| ||||||||||| |||||||| || || || ||||| | |||||| |||
Sbjct 285 AATGGAGATCTCGAGACACTAATCTCCGTCAAATCGGACGAAGATCTGGTGAATATCGTT 344
Query 301 GAAGAATACGATCGTGTTTACGGAGGCAAGATCCGTGCGATTTTGTCGCCTCCCAAGCAG 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 345 GAAGAATATGATCGTGTTTACGGAGGCAAGATCCGTGCGATTTTGTCGCCTCCTAAGCAG 404
Query 361 ATGTCGCCACGATCTAGCGGCGGTTGTGGAGATCTATCACCGAAATCGCCATTCTCCGTC 420
||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||
Sbjct 405 ATGTCACCACGATCTAGCGGCGGCGGTGGAGATCTATCGCCGAAATCGCCGTTCTCCGTC 464
Query 421 GTGGCTTCTCCTTCTCCGCCTCGTTACTGTTTGGCTCCG--G-CGGAGAATCTTCTCAGT 477
||||||||||| ||||||||||| || ||| |||||||| | |||||||||||||||||
Sbjct 465 GTGGCTTCTCCATCTCCGCCTCGGTATTGTGTGGCTCCGCCGACGGAGAATCTTCTCAGT 524
Query 478 AGATTCCGTATGAGAACTGGAGAATATTCTCGTTGCTGTAACTGCCGTGTTCACAA-CAA 536
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||
Sbjct 525 AGATTCCGTATGAGAACTGGAGAATACTCTCGTTGCTGTAACTGCCGTGTTC-CAAACAG 583
Query 537 AGACTCCAAGCTTATCTGGCAATAACGTT-GACGGTGAAATAAAAAT 582
|||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 584 AGACTCCAAGCTTATCTGGCAATAACGTCAGACGGAGAAATAAAAAT 630
> AT5G63130.1 | Symbols: | Octicosapeptide/Phox/Bem1p family protein
| chr5:25323102-25324272 FORWARD LENGTH=1082
Length=1082
Score = 261 bits (141), Expect = 5e-69
Identities = 239/287 (83%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 54 GAA-CAGTCTCAAGTTCCTCTGCAGTTACGGTGGCAGAATCCTCCCTCGTTCTATCGATG 112
||| |||||||||||| || ||||||||||||||||||||||||||||| || | ||| |
Sbjct 123 GAAGCAGTCTCAAGTTTCTATGCAGTTACGGTGGCAGAATCCTCCCTCGCTCCACCGACG 182
Query 113 GAAATCTCCGTTACGTCGGCGGTTTCACCAGAGTACTCTCCGTTCATCACTCAATCTCTT 172
| || |||||||||||||| ||| ||||||||| ||||||||| ||| || |||||||
Sbjct 183 GCAAGCTCCGTTACGTCGGAGGTCACACCAGAGTCCTCTCCGTTGATCGTTCTATCTCTT 242
Query 173 TCACAGAATTGATGATGAAATTGGAGGAATTTTGTGGCTATTCCGTTGAATTGAAG-TGT 231
|| |||| |||||| |||| | | ||||| ||||| || |||||||| || | | |||
Sbjct 243 TCTCAGAGCTGATGAAGAAACTCTATGAATTCTGTGGATACTCCGTTGATTT-ACGATGT 301
Query 232 CAATTACCAAACGGAGATCTGGAGACACTAATTTCCGTCAAGTCAGATGAGGATCTAGCG 291
|||||||||||||||||||| ||||| ||||| |||||||| ||||| || || ||||||
Sbjct 302 CAATTACCAAACGGAGATCTCGAGACTCTAATCTCCGTCAAATCAGAAGAAGAACTAGCG 361
Query 292 AATATGGTTGAAGAATACGATCGTGTTTACGGAGGCAAGATCCGTGC 338
| || |||||||| |||||||| | | ||||| ||||||||||||
Sbjct 362 GAGATCGTTGAAGAGTACGATCGCATCTGCGGAGCCAAGATCCGTGC 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5