BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937652
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48850.1 | Symbols: PHT3;2 | phosphate transporter 3;2 | chr... 1609 0.0
> AT3G48850.1 | Symbols: PHT3;2 | phosphate transporter 3;2 | chr3:18114526-18116499
REVERSE LENGTH=1404
Length=1404
Score = 1609 bits (871), Expect = 0.0
Identities = 1061/1149 (92%), Gaps = 27/1149 (2%)
Strand=Plus/Plus
Query 1 TTTCTCTTCTTCTCCT-TGGAAATGTCTGACTCAAGCAGATCGCTGATCCCGAG-TTTCC 58
|||||| ||| || || | ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 59 TTTCTCATCTCCT-CTCTCGAAATGTCTGACTCAAGCAGATCGCTGATCCCGAGCTTT-C 116
Query 59 TCTACTCGTCCGATCATCATCGTCTGTTTCAGTCGCCGGAGCCTTCCACGACCATGACTC 118
|||||||||||| |||||||||| |||||| | | || | ||| || | ||||
Sbjct 117 TCTACTCGTCCG---ATCATCGTCTTTTTCAG--G-C-GA--CGACCATGA--GT-ACTC 164
Query 119 ATGTTAAATCACGGCCGTTGATTCCTCCG----A--CTTC---CTCATCTAATGGTACCA 169
| ||||||||| |||||||||| ||||| | |||| |||||| || |||||||
Sbjct 165 ACCTTAAATCACAGCCGTTGATTTCTCCGACTAATTCTTCAGTCTCATCCAACGGTACCA 224
Query 170 GTTTCGCCATCGCGACGCCGAACGAAAAAGTGGAAATGTACTCGCCAGCATACTTCGCGG 229
|||||||||||||||||||||| ||||||||||||||||||||||| || || |||||||
Sbjct 225 GTTTCGCCATCGCGACGCCGAATGAAAAAGTGGAAATGTACTCGCCGGCGTATTTCGCGG 284
Query 230 CGTGTACGGTCGCCGGGATGTTGTGTTGCGGTATCACACACACGGCGATTACGCCTCTCG 289
|||||||||||||||||||| || | ||||||||||| ||||||||||||||||| || |
Sbjct 285 CGTGTACGGTCGCCGGGATGCTGAGCTGCGGTATCACCCACACGGCGATTACGCCACTTG 344
Query 290 ATGTCATCAAATGCAACATGCAGATTGATCCACTCAAGTACAAGAACATAACTTCTGCTT 349
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 345 ATGTCATCAAATGCAACATGCAGATTGATCCACTGAAGTACAAGAACATAACTTCAGCTT 404
Query 350 TCAAGACAACAATCAAAGAACAAGGGCTCAAGGGATTCACTAGAGGCTGGTCACCAACAC 409
||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| |
Sbjct 405 TCAAGACAACAATCAAAGAGCAAGGGCTTAAGGGTTTCACCAGAGGCTGGTCACCAACGC 464
Query 410 TTCTCGGGTACAGTGCCCAGGGAGCTTTTAAATACGGTCTCTATGAATATTCCAAGAAAT 469
|||| || ||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 465 TTCTTGGTTACAGTGCCCAAGGAGCTTTTAAATACGGTCTCTATGAGTACGCCAAGAAAT 524
Query 470 ACTACTCAGACATTGTTGGACCAGAATACGCAGCCAAATACAAGACCTTGATTTACCTTG 529
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 525 ACTACTCAGACATTGTTGGACCAGAATACGCAGCTAAATACAAGACCTTGATTTACCTCG 584
Query 530 CTGGCTCGGCCTCTGCAGAAATCGTCGCTGATGTGGCTCTTTGTCCAATGGAAGCTGTCA 589
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 CTGGCTCAGCCTCTGCAGAAATCGTCGCTGATGTGGCTCTTTGTCCAATGGAAGCTGTCA 644
Query 590 AAGTCAGGGTCCAGACTCAGCCTGGTTTCGCCCGCGGTTTATCTGATGGTTTACCAAAGA 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AAGTCAGGGTCCAGACTCAGCCTGGTTTCGCCCGCGGTTTATCTGATGGTTTACCAAAGA 704
Query 650 TCATCAAATCCGAAGGCTTCCGCGGGCTATACAAAGGCCTTGTTCCTCTCTGGGGACGCC 709
|||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct 705 TCATCAAATCCGAAGGCTTCCGCGGGTTACACAAAGGACTTGTTCCTCTCTGGGGACGCC 764
Query 710 AGATTCCATATACGATGATGAAATTTGCTACTTTTGAAAACACTGTGGAGCTCATATACA 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 AGATTCCATATACGATGATGAAATTTGCTACTTTTGAAAACACTGTGGAGCTCATATACA 824
Query 770 AAAAAGTGATGCCTACCCCAAAAGAAGAGTGCTCAAAGCCAGTTCAGCTCGGAGTAAGCT 829
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 825 AGAAAGTGATGCCTACCCCAAAAGAAGAGTGCTCAAAGCCAGTTCAGCTCGGAGTTAGCT 884
Query 830 TTGCAGGTGGATACATTGCTGGAATTTTCTGTGCCGTCATCTCACATCCTGCAGATAACT 889
||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |
Sbjct 885 TTGCAGGTGGATACATTGCTGGAATATTCTGCGCCATCATCTCACATCCTGCAGATAATT 944
Query 890 TAGTCTCTTTCCTCAATAACTCTAAAGGAGCAACCGTTGCTGATGCGGTAAAGAGGCTAG 949
| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 945 TGGTGTCTTTCCTCAATAACTCTAAAGGAGCAACCGTTGCTGATGCAGTAAAGAGGCTAG 1004
Query 950 GATTATGGGGTATGTTTACCCGCGGCCTTCCTCTTCGCATTTTCATGATAGGAACACTCA 1009
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1005 GGTTATGGGGTATGTTAACCCGTGGCCTTCCTCTTCGCATTTTCATGATAGGAACACTCA 1064
Query 1010 CTGGAGCGCAGTGGGTTATCTATGATGCTGTCAAAGTTTTAGCTGGATTGCCAACCACTG 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 CTGGAGCGCAGTGGGTTATCTATGATGCTGTCAAAGTTTTAGCTGGATTGCCAACCACTG 1124
Query 1070 GTGGT-CTTTCTCCAGCTACAACGATTGCTTCATCTGTAAGTGCATAAAATTACAAGGAC 1128
||||| ||| |||||||||| || ||||| |||||||||||||||||||||||||| |
Sbjct 1125 GTGGTGCTT-CTCCAGCTACTGCGCTTGCTCCATCTGTAAGTGCATAAAATTACAAGAAT 1183
Query 1129 ATTCCTCGC 1137
|||||||||
Sbjct 1184 ATTCCTCGC 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5