BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937667
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48990.1 | Symbols: | AMP-dependent synthetase and ligase f... 2494 0.0
> AT3G48990.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr3:18158747-18161379 REVERSE LENGTH=1914
Length=1914
Score = 2494 bits (1350), Expect = 0.0
Identities = 1499/1572 (95%), Gaps = 6/1572 (0%)
Strand=Plus/Plus
Query 2 TCTCTCAGACGTAATAACCATGGATAGCGATACTCTCACCGGATTGTTGGAAAACGTCGC 61
|||||| |||| ||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 70 TCTCTCCGACG---TAACCATGGATAGCGATACTCTCTCAGGATTATTGGAAAACGTCGC 126
Query 62 CAGACAATTCCCCGATCGCCGAGCTCTCTCCGTTTCTGGAAAATTCGATCTCACTCACGC 121
|| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 127 CAAAAAATTCCCCGATCGCCGAGCTCTCTCCGTTTCTGGAAAATTCAATCTCACTCACGC 186
Query 122 GCGTCTTCACGATCTAATCGAACGCGCCGCTTCACGCCTTGTCTCCGCCGCTGGCATCAA 181
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 187 GCGTCTTCACGATCTAATCGAACGCGCCGCTTCACGCCTTGTCTCCGACGCTGGAATCAA 246
Query 182 ACCCGGCGATGTCGTCGCTCTCACCTTCCCTAACACCGTCGAGTTTGTTATAATGTTTTT 241
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 ACCCGGCGATGTCGTTGCTCTCACCTTCCCTAACACCGTCGAGTTTGTTATAATGTTTTT 306
Query 242 AGCGGTGATAAGAGCTAGAGCGACGGCGGCGCCGTTAAACGCAGCGTATACGGCGGAGGA 301
||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 307 AGCGGTGATAAGAGCTAGAGCCACGGCGGCGCCGTTGAACGCAGCGTACACGGCGGAGGA 366
Query 302 ATTTGAGTTTTACCTCTCTGATTCAGATTCAAAGCTATTATTAACCGCTAAAGAAGGAAA 361
|||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||
Sbjct 367 ATTTGAGTTTTACCTCTCCGATTCAGATTCAAAGCTATTGTTAACCTCTAAAGAAGGAAA 426
Query 362 CGCACCGGCTCAAGAAGCAGCTTCAAAGCTGAAAATCACTCACGTCACCGCTACGCTGCT 421
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 427 CGCACCGGCTCAAGAAGCAGCTTCAAAGCTGAAAATCTCTCACGTCACCGCTACGCTGCT 486
Query 422 TGACGCTGGCTCGGACCTTGCT-CTGTCCGTTGCGGATTCTGACTCGGTCGTTGACTCAG 480
|||||||||||||||||||| | || |||||||||||||| || || |||||||||||||
Sbjct 487 TGACGCTGGCTCGGACCTTG-TACTATCCGTTGCGGATTCAGATTCCGTCGTTGACTCAG 545
Query 481 CGACGGAACTCGTTAATCACCCGGACGATGGTGCTCTCTTCCTCCACACTTCTGGCACGA 540
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 546 CGACGGAACTCGTTAATCACCCGGACGACGGTGCTCTCTTCCTCCACACTTCTGGCACTA 605
Query 541 CGAGCCGTCCAAAGGGTGTACCGCTTACGCAGCTCAATCTAGTTTCATCCGTCAAGAACA 600
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 606 CGAGCCGTCCAAAGGGTGTACCGCTTACGCAGCTCAATCTAGCTTCATCCGTCAAGAACA 665
Query 601 TTAAAGCTGTTTACAAGCTGACCGAGTCTGATTCTACGGTGATTGTTCTCCCTCTGTTCC 660
|||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 666 TTAAAGCTGTGTACAAGCTTACTGAGTCTGATTCTACGGTGATTGTTCTCCCTCTGTTCC 725
Query 661 ATGTTCATGGATTGTTAGCTGGTTTGCTTAGCTCGCTTGGAGCTGGTGCGGCTGTGACTC 720
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 726 ATGTTCATGGATTGTTAGCTGGGTTGCTTAGCTCGCTTGGAGCTGGTGCTGCTGTAACTC 785
Query 721 TTCCAGCTGCTGGTAGATTCTCAGCAACAACGTTTTGGCCAGACATGAAGAAGTATAACG 780
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 786 TTCCAGCTGCTGGTAGATTCTCAGCAACAACATTTTGGCCAGATATGAAGAAGTATAACG 845
Query 781 CTACATGGTATACTGCTGTTCCGACTATTCATCAGATCATATTGGACCGCCACTCGAGCC 840
||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 846 CTACATGGTATACTGCTGTGCCGACCATTCATCAGATCATATTGGACCGCCACGCGAGCC 905
Query 841 ACCCTGAGCCGGAATACCCTAAGCTCCGGTTCGTCAGGAGTTGCAGTGCTTCTTTGGCTC 900
|||||||| ||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 906 ACCCTGAGACGGAATATCCTAAACTCCGGTTCATCAGGAGTTGCAGTGCTTCTTTGGCTC 965
Query 901 CGGTGATATTGTCCAGGCTTGAGGAAGCTTTTGGAGCACCGGTTCTCGAGGCCTATGCGA 960
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 966 CGGTGATATTGTCCAGGCTTGAGGAAGCGTTTGGAGCACCGGTGCTCGAGGCCTATGCAA 1025
Query 961 TGACAGAGGCAACACACTTGATGAGCTCAAACCCCTTACCAGAGGAAGGTCCACACAAGC 1020
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TGACAGAGGCAACACATTTGATGAGCTCAAACCCCTTACCAGAGGAAGGTCCACACAAGC 1085
Query 1021 CTGGGTCTGTTGGGAAACCGGTTGGTCAAGAAATGGCGATCCTCAATGAGAAAGGCGAGA 1080
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1086 CTGGGTCTGTTGGGAAACCGGTAGGTCAAGAAATGGCGATCCTTAATGAGAAAGGCGAGA 1145
Query 1081 TACAAGAGCCCAATAACAAGGGAGAGGTTTGTATAAGAGGGCCAAATGTGACGAAGGGTT 1140
| |||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 1146 TCCAAGAGCCAAATAACAAAGGAGAGGTTTGTATAAGAGGTCCAAATGTGACCAAGGGTT 1205
Query 1141 ACAAGAACAATCCAGAGGCCAACAAGGCAGGTTTCGAGTTTGGGTGGTTCCACACGGGTG 1200
||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1206 ACAAGAATAACCCAGAAGCCAACAAGGCAGGTTTCGAGTTTGGGTGGTTCCACACTGGTG 1265
Query 1201 ATATCGGTTACTTTGATTCCGATGGGTATTTGCATCTGGTGGGTCGGATCAAAGAGCTAA 1260
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1266 ATATCGGTTACTTTGATACCGATGGGTATTTGCATCTGGTGGGTCGGATCAAAGAGCTTA 1325
Query 1261 TTAACCGTGGAGGTGAGAAGATATCTCCAATTGAAGTAGATGCAGTACTCTTAACTCATC 1320
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1326 TTAACCGTGGAGGTGAGAAGATATCTCCAATTGAAGTGGATGCAGTACTCTTAACGCATC 1385
Query 1321 CTGACGTTTCTCAGGGTGTTGCGTTCGGTGTTCCTGATGAGAAATATGGCGAAGAGATTA 1380
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1386 CTGACGTTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAGATTA 1445
Query 1381 ACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGACATTAAAGCGTTCT 1440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1446 ACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGACATTAAAGCGTTTT 1505
Query 1441 GTAAGAAGAATTTGGCAGCTTTCAAGGTGCCAAAGAAAGTGTTCATCACTGATAACCTCC 1500
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1506 GTAAGAAGAATTTGGCAGCTTTCAAGGTGCCAAAGAGAGTGTTCATCACTGATAACCTCC 1565
Query 1501 CCAAAACTGCCTCTGGTAAGATTCAGCGTCGTATCGTCGCGCAACATTTCCTCGAGAAAC 1560
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 1566 CCAAAACTGCCTCTGGTAAGATTCAGCGCCGTATCGTCGCACAACATTTCCTTGAGAAGC 1625
Query 1561 CCTAAAA-ACAC 1571
||| ||| ||||
Sbjct 1626 CCTGAAACACAC 1637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78262649655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5